GgaINT0047790 @ galGal4
Intron Retention
Gene
ENSGALG00000009362 | ITGA6
Description
integrin alpha-6 precursor [Source:RefSeq peptide;Acc:NP_990620]
Coordinates
chr7:17214612-17216304:-
Coord C1 exon
chr7:17216175-17216304
Coord A exon
chr7:17214670-17216174
Coord C2 exon
chr7:17214612-17214669
Length
1505 bp
Sequences
Splice sites
5' ss Seq
TTGGTAATT
5' ss Score
5.73
3' ss Seq
CTTTTTCTCCTCGGCCCCAGTGT
3' ss Score
7.99
Exon sequences
Seq C1 exon
TGTGGTTTCTTCAAAAGAAGTAAGAAAGATCATTACGATGCCACATATCACAAGGCTGAGATCCATGCTCAGCCATCTGATAAAGAGAGGCTTACTTCTGATGCGTAGTATTGATCTACTTCTGTAATTG
Seq A exon
GTAATTGATGATATTTTTTAATTTTTAGCTGTGGTGGCACATGCTGTGGGTGTGGTGGCTAACGATGAAGCTTTTGCTGCGTATGTTCTATTAACTTTTGGATTTCAGACTGTCAGTACTTGCTTGCTTATTCCGTTAATAGATGTTCAGCTTTTAGCGTACATAAACAGGTGGTTACCTTGGTCTAAGAAGCTTCCAGTTCTATAGAAAACATCGATCTGTTGCAGTGGTTTTTAGCCTTTTTAACTGATGTTTTAACAAAAAGGTTTTTTTAAGCTTTAGTGATGATAATCAACAATGCAGAGTTCATATTTACAGCTAAGACTATCTAGAAGATGAACTTGCTTTATTAACCTTTCACTGCATGCTTAAAGTTGCTAATAACAAAAGGAGTTTTCTTAAATAAAATTATATTTATTTATATAATAATTGCTGTAGAAACACATTTTTCCTCAGTTTGGAAAATACTTTTCTAGAAGAAACCTCTCTGCTGAAGCTACCAGGATGCATGGCAACTTAGGCTTCTTTACTCAACCTTTACTCAAGACAATACATGCATGTACAGGATATTAATTAGAGATGCTTTGAGATAAGGAGTTGGGAAAGAATTCTTATCTAAGATCTGTTGAAACTATGTGTAATGAAATTTTCATTATGAGATGGACCAAATTTTTAGCTATGGTTTGTTTTTTTTTTTTTATTTCCTCTTAAAATACAGGTCTATTGAAGCTTTATTTTAAAACGTTTTTTAAAAACAAGTCACAAGTGAAATACTACCTCTTATTTTTTTTTTTTTGCTAGTGGTATGGAATCACAGTTTGGCACAATGTCTCATACTTTTCATCTTAGACTTCAGAAACCTATCAACAAGTGTTTGCCAGTCATCATCACTGTACCATTGTGGCCAAAGCTCATTTTATTCTGAACATTCATTTCAGTCTTCTTAAGTAGTTTAAAAAAAAAATAACCAGGTTTTATAGTGGTTTTGATTATAAAGAAAACTTTTGGGGCACAAACAAGGTTTACTGCCTTTCATACAGGGAGGTGTTCATCATAGGATACTACAAAATTTCAATTTATGTCTGTTTTTCACTCTATGGCAAATTACACAAGACTTGTGTTCTAGTACTGTAAACGTATGGTTAGTTAAGGTAGTAGTAGTGATGGTGCTTTGAAAAGATGACCTTAGTGTAAGCTTTTCTTGAAAGCCCTGGAATTCTTTCTATAAATTTAATGGTAAATCACATCAACATACAGGAAGGTAATGAATTACCTTTGATTCAGGAGAAGTAAGCGTTTCTGAACTGTATGTACATCTTTACTTAGCATGCAGTTTTCTCAATATATTACCGAACAACTTTAGAGGAAGACTCATACAGTGTGTTCTGAGTCTGTATCTTTTTGTATTCAGTTTTCTTACCTTTATGAAGAAGGCATTGCCTCTGTAGTTGTAGTAATTCCACAGCAATTTCACTCTAAACTTCTCTTTTTCTCCTCGGCCCCAG
Seq C2 exon
TGTGGGTTCTTCCAGCGTTCCAGGTACGATGACAGCGTCCCCCGCTATCATGCTGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009362:ENSGALT00000038606:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0035715=Integrin_alpha=PD(86.7=36.1)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]