BtaINT0081469 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007963 | KIDINS220
Description
kinase D-interacting substrate, 220kDa [Source:HGNC Symbol;Acc:HGNC:29508]
Coordinates
chr11:88534104-88536767:+
Coord C1 exon
chr11:88534104-88534330
Coord A exon
chr11:88534331-88536653
Coord C2 exon
chr11:88536654-88536767
Length
2323 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
GTCACGTGTTTTCTCCATAGCCA
3' ss Score
8.91
Exon sequences
Seq C1 exon
ATGTTCGTGCTGCAAGAGACCAGATTAATATCGGAGGACTTGCGTATCCCCCGCTACCTCTGCACGAGCCTCCCCCTCGACCGCCGTCCGGCTACAGTCAGCCAGCGTCTGTCTGCTCTTCGTCCACCTCCTTCAATGGGCCATTCGGGGGAGGGGTTGTGTCGCCGCAGCCTCATAGCAGCTACTACAGCGGCATGACAGGACCCCAGCACCCCTTCTACAACAGG
Seq A exon
GTAAGCAAGTGCCCGGCATCTTAAATTGAAGAATTTCTTCCAGGAAAAGGCTAGAAGTGTTCTGCTAATGGAGTCTGTTACCATTTTGAAACTGTACTTTAGCTGTAAAGACAAAAAATGTTGTTTGAATGTAATATTTTTTAAAAATCAGAAGATTTTTGAATCTTAACAGGTTCTAGATCTCAATTGAGTCTGAATAGTAGAGATGCTTTTTGCTTTGATTTATTGTCCTGATAAGAAAGTGAACTCTGTGGGGTCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGTTGTATCTTGTATAATAACTTATATTGGCATTCAAAACAATGATAATTTTTAGTTCAGTAAACCTATATTCAATGTGATACAGCTTTTAAATGTGAGATAATGGTGGGTCCTAGTGCTTGAAGGAGGACTCAGATGCTATTGGCCAGATAGCATGTAGTCTATTTCTAGAGCTTTATTTCACACTACCTTCAGTCATGTATAATTATTTTCATACTATAAATATAATTTTCTACTTCAAATGATGAGAGCACAAATTCATTATCAGCAGTATTCAGACCCTGTCGAGTTTAGTAGCTCCAAGCTATCCTCATTTTAATGGTCTTGAACACTAATATTTTCTGTAGGAAAACAGAACAACGGCCCTACTATTATATTGGGTTGGTCAAAAAGTTTGTTCAAGCTTTGCCATAAGATGGTATGGAAAGGCCTGAATGAACTTTTTGACCAACCCAATATTTTCTGCAACTGAACTCTAAAATCCATTGTTTCTTTATTTTTGTTGTCTCCCTCTTTAGTCTGAAGTGAGAAAACATAGGGGCTAGCATTCACAGATGGAGAAGGAAATGGCAATCCACTCCAGTATTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCCGTCTATGGGGTCGCACAGAGTTGGACACAACTGGAGCGACTTAGCAGCAGCAGCAGCAGCAGCATTCACAGAAGCCAATGCATGCCTAAATAAACTTTCAGTAAGCTAGAAAGAGAAATTTGAATAAACGTGGCAAAGAAGAAATTCTAGAGTTTAAATTTTTCAGTTTTTGAGAAATGGTAGCCATGTAAGTAATTAGGTATACCATCTTTAGAGGTCTTATGAATGTTATTCCATCCTTTTACTCAAATAAGGAGGAAAAGGTGGAATGATAGCATTTGATAACATACTTCATCTCTGTAAACTTTAACTGAGTGCTAGGAAGTGTGAAATTCAGGTTTTTATTTAGCAGTCCTGAAATCTGCTGTAATTTTACATAAATGTCTCAACCAATAATCAGATGACATTTGATGTTTTGAGACCAAGAAGTTTTTTTTGTAATTATCATACCATCTAGGTGGAGACTTTGTGTTCACTAATTTCATGTGAACAACAATGATGTACGATGCTTTAGTAGTGTTTTATTATTTTTAAAACATTAAAAAATTCTTATGCTTTTAGATTTAGTTATTTTTTGTCTGAAAGTTAAAAGCTGAACAATTTTCTTAAAATGGCAGGAATGAAAAAGGTAAGGGAAGGTGTTACATCAGTGTAATGAAGTTTAATATGTTTTAATCTTTATTTTTAGCCCATATAATCTGATAGCTCCGGTTTATATGAAGCTGGCTATAGATAAATCCTATAGTTATAGATTTCCTCTAAACAGTGGATTTCCCTTTTAAATAATATCCTTGCTTATTTAGCAGATAGCATAAACTCCAGGGTATAAAGTAAAATCTAGCAACTTGGAGTAATAATATTCCTGAAATCCATGCTAGGAGGTTCTTAAATAATTCAGACTGTTTTTTTGGTCTTAGTTAAGGCTAATCTTTTTTTGGTAAAGAATAATACTCAATTGAGATTCTATTCTGCTTTTTTTTGGGTGAGATTGTGAGTTAATATTTGTATTTGTAAATCACTTAGAACCTGACACATGGTAAACCGCCCATAAAAGTGTTAAATGTAAAGAGAAACTCTGGTGTCAACTTGTAAAGTACAAAACTTTAGTTGCTTTATAAAAAGATTGTATTAAATCAACAATATAAAAATTTAAATAATATGACTTAAGTTTGGGTTTGATATCTTATAGAATATGAGTGAGGCATTTTTTTCTTCTGTTTTGTCACTTGCATTTAAAAATTTGGAGTTGTATTTTGTTGGTTAGTTTCATTTGATAAAGCTCATTATACTTTGATTTTGGTAATTGTTTTGTCACGTGTTTTCTCCATAG
Seq C2 exon
CCATTCTTTGCCCCCTACCTTTACACGCCAAGGTACTGCCCTGGCGGCTCCCACCATCTCATCTCACGTCCATCAGTAAAAACGAATTTGCCCAGAGATCAGAGCAATGGCCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007963:ENSBTAT00000061437:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.478 A=NA C2=0.447
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development