MmuINT0086558 @ mm10
Intron Retention
Gene
ENSMUSG00000036333 | Kidins220
Description
kinase D-interacting substrate 220 [Source:MGI Symbol;Acc:MGI:1924730]
Coordinates
chr12:25038324-25040569:+
Coord C1 exon
chr12:25038324-25038550
Coord A exon
chr12:25038551-25040455
Coord C2 exon
chr12:25040456-25040569
Length
1905 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
TGTTACATGTTTCTCCATAGCCA
3' ss Score
9.3
Exon sequences
Seq C1 exon
ATGTTCGAGCTGCAAGAGAACAGATCAACATAGGAGGCCTTGCGTATCCCCCGCTCCCTCTGCACGAAGCCCCTCCTCGGCCTCCTTCTGGGTACAGTCAGCCTGCATCTGTCTGCTCCTCCTCAGCATCTTTCAATGGGCCGTTCCCAGGCGGCGTTGTGTCCCCACAGCCCCACAGCAGCTACTACAGCGGCCTGTCGGGACCCCAGCACCCTTTCTACAACAGG
Seq A exon
GTAAGAGTCGGCACCTCGCCTTTACAGTGTCTCTTCCCAGGGGCACCATCATTCTGCCATCTCCAGGCTTGGGCACTGGTTTGGAGCTATAATTTGGCTTTAAAATAGGAAAGTCTAAGGCTTAAATGTACAAGTGTATGATTTTTTTTTAAAACTGAGTCTTGGATTTTAATATGTTCTAGAGTTCTAAAGAGTGTGAATATAAGAATATTGGCTTTTATTTTCTTGTTAAAGGAAACACTGTAACAACAATGGTTCCTTTGGTATATTTTGTTATAGAAATTTATATTGGCATTCATAACAGTGATAAATTCCTAGAGTCATTCATATCCTTAGACATATGTGAAATAATAACGGGCCCATATTACTTGAAGGATCAAATGTTATTGCCAGTTAATTCCACCATATGCCATTTTAATTTTAAATACCTTTAGTCATATATAATTCTTTGCTTAATACACAATTTATTAACTAAAAAATAAAAGCACAGTTTCCAGTGGTACCCAAACCATGTTGGATGTAGTTGCTCGAAGTGTCTGTTCTCATCTTAATGCCCTAATCGTGTAATGACACTAATGATTTCCTGTAGGAAGACGGATCATGAGCTGTAGTATGCTTTGTGGAATCCTACTTTTAAAATCCATTGTAGGTTTTAATCCTCCTTTTCTCCCTGGTTAGTGTATAAGGAAAACACAGGCTAATATTCATAGAGGACAACTGACTGCAGGACTTTATCCATAGGAGCTGGCAAGGAAGAGTTTGGGGAAAGTGTGGCAAAGAAGGAGTTGAGAATTTAAATTAAATTGTTATTTTTTAAATATCTATATTGGTAATTAGCTTTGTTGTTTGTAGAGCCTTAGAAATGTAATACCATTTTTCTGTGTGGACAAGACAACACAGGAGCACTCATGAGAATGTTTGTTCTCTGTCAAAATTAACTGTGTGGTAGGTGGTGTGGAATATAGATCTGCAGTCACTAGTCTTAAAATCTGCTGCAATTTTACATAAGGTGGCTCAATTAATACTAATTAGAGGTGTGAAAATATATTTATTTGAAAAAAGTTATGAAACTATGCTGGTATCTTACATTCATCATTCATTTATTTTAAGAGCAACAATGTAATATAATTTTAAAGTATCTAATTATTTTTAAGACATTAAAGTTTCTCTTATGTTTTTAGGTTTAGTGTTTCTGTTATTATTTAATGGTATTATTCATACAGTTGAAAGTCATAGTAATTCTATTCTCTTAAAGTGCCAGAGTAAAGAAGAGAGAAGCGGCCACCTCAGTGCAGAGAAGCCTAATGAATTCTGACCTTTATGTTTCCAGTCCCTAGAATCTGATGTGTGAAACCAGCTACATGTAAATTCGGAAGTTAAGTCTTGTGTAGCTAGCAGGCTCCCCGTCTCATAGTCTAGCGTGCACTCCGGTGCCGGGACACAGCTGAGCTCCAGGGCCCCCCAGTGAGGTTGTCCTTGGAAACACTGACACTTGTTTCCAAGTGACCAGGGCAGTTTTGAGTCTTAGTAACTATTTTTTTTTTTTTTTGGTAAGGCAGAGTATTCTGTTAACATTCTAGTCAGTTTTAAAGAAGAATTTGTTAGTTAATACATAGAAACCATGTACAGCAAACTTGTTAAGATGCTAAATATAAAGCAAATGTTTGTGTTAAGTCACGAGGTACAAAACTTGAGCTGTGTTTTAAGCCTATGTCTGATGAAGGAGGCAGTGTCATTGTCCTAACTCTGGTCTGGATCTCAAGGCCAGCGGGAGCATGAGACTTTTGTTTTGTCACTTGCTTTTGAAGTTTGGAGTTGTGTTGGTTAGTTTCACTTGATGACTCTCATTACACTTTGATTTCTGTAATTGTTCATGCCCTTTTTTTGTTACATGTTTCTCCATAG
Seq C2 exon
CCATTCTTTGCCCCATACCTTTACACGCCAAGGTATTACCCTGGCGGTTCCCAACATCTCATCTCACGTTCATCAGTAAAAACGAGTTTGCCCAGAGATCAGAACAATGGCCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036333:ENSMUST00000066652:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.355 A=NA C2=0.447
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCGAGCTGCAAGAGAACA
R:
GGCCATTGTTCTGATCTCTGGG
Band lengths:
338-2243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types