HsaINT0087366 @ hg19
Intron Retention
Gene
ENSG00000134313 | KIDINS220
Description
kinase D-interacting substrate, 220kDa [Source:HGNC Symbol;Acc:29508]
Coordinates
chr2:8888017-8890465:-
Coord C1 exon
chr2:8890242-8890465
Coord A exon
chr2:8888131-8890241
Coord C2 exon
chr2:8888017-8888130
Length
2111 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
TGTTACATGTTTTTCCATAGCCA
3' ss Score
8.72
Exon sequences
Seq C1 exon
ATGTTCGTGCTGCCAGAGAGCAGATCAGTATTGGAGGACTGGCGTACCCCCCGCTCCCTCTACATGAGGGTCCTCCTAGGGCGCCATCAGGGTACAGCCAGCCCCCATCCGTGTGCTCTTCCACGTCCTTCAATGGGCCCTTCGCAGGTGGAGTGGTGTCACCACAGCCTCACAGCAGCTATTACAGCGGCATGACGGGCCCTCAGCATCCCTTCTACAACAGG
Seq A exon
GTAAGGAAGTTGGAGGCAGCTTTATTTTTAAGAATTTGTTACAGGGAAACCTCAGTTTTCTGCTTGTGGATTCTGTTTTGGTTTTAAAGCTGTACTTTGGCTTTAGCATAGGAAAAATGTAAAGTTTGAATGTAAAATATAGGACTTTTTGGAAATCAAAATAATTTAGAATTTTAATGTGTTCTAGGTCTCAAGAGAGTCTGAATATTAGATTTTTTTTTCTTTTATTTAGTTTCTTGATAAGTAAATGGACTCCACAGGGTCAGCAGTGACTGTCCTAGCTTCAAAGGAATCTGTTTTTTGTTTGTTTATAAACAAATGTTCTATTTGTTATATCTTGTATAATAGTTTATATTGGCATTTAAAACAATGATAAACTTAAATTCCTATAGTAGTTTAGTAAACCTATACTTAATATACCTTTGTCTTTTAAATGTGAGATAATAATGGGAAAGTACTGCTGTGGAACTCAGATGTTTTTCCAAATAATAGCACTGTAGCCCATTTTTAGAGTCTTATGTCAAGTTATCTTCAGTCATCTACAATTTTTTAGTTAATATAAATAGGATAATTTCCCAGATGAAAAGATGAAATGCAACTAATTATCAGTGGTATTCAGGCCCTGTCAAGTTTAGTAGGCCCAAGCTATATTCTCACTTTAATGACCTCAAACACTAATATTTCCTGTAGGAAAATGGAGCATGAACCTGGGGTTACACTTTCTGGAACTGTTCTCTTAAGGTGCATTGCAATTTCTTATTTTTGCTATCTCCCTCTTTAGTCTAATTCGAGAAAACATAGGACCTAGTTAGTCATAGAAGCCTAGTGCCTAAACTGCCTGTGTAAATACATCTCATATGAGCTGGGAAGAAAGAGAATTTAGGATAAATGTGACAAAGAAAGGATTCTAGAATTTAAACTTTCAGTTTTTGAAAAATGGTGGCCATATAAGTAATTAGGTACTGTTTAAAGAGTCCCGAGAAATGTTACTCCGTTTTTCTATTTGGACAAGGAGACAAAGGTGGAATAATAGCATTTTATCATGTATTCCATCTTTTAAAATTTAACTGTGTGGTAGGCAGTGTGAAATGCAGGTTTTTATTTACCAGTCTTAAAATCTGCTGTGTAAGTTTGCATAAAATAGCTCCGTTGATACCAACTGAAAATTTGAAACTGAGAAGCTTATTTTAAAAAATGAAAGATTACCTTACCATCTAGCCTGAAATACTATGTTCACTAATTTCATGAATAACAATAATGTAATCATGCTTTTTAATAGTATTTTATCATTTTTAAAAACATTTACAGTTTTCTCTTGTTTTTAAATCTAGCTACTTTTTGCTGTAGTTATTTGAGATTTTTTAGTGTTAAAAGCAGAATAATTCCTCTAAGCTGGCAGGAGTAAAAAGGGTGGGGAAGGTTTCACCTCAGTGTAACAAAACCTTATGAACTGCAGTCTTTATGTTTAGCCTGTATAATTTGATATCTTCTGTTTATATGAAGCTGGTTACAAATGTATGCCATTGTTATAAATCTCACATAAACAGTGGATTCCCCACGTTTTTTAAAAAAAATATGCTTGCTTATTTAGGTTATAAACTCTAGGGTGTAAACTAGAGGTGAACTCCAGGAACTTGTAATAACATTATTCTTGGAATTTGTGCCAGGGTGTTTTCATATATTCCAGACTTTTTGGTCTTATTTAGGCTAATCTTTTTTTATTGGTAAGGAATAGTATTAAGATTCCAGTCTGCTTCTTTTAAAAAGATTATGAGTTAATATTGGTTAAACTGCTTAGAACCTGACAGATGGTAAGCTTGTAAACATATTAAATATAGAGAGAAACTCGTGTCAAACTGTAAAGTGCAAAACTTTAGTTGCTCATTTTTCTGAAAAAAGCTTATATGAAATGACCAATATAAAAATGTAAGTAATATTTCTTAAGTTTGAGTTTAGCATCTTATGGAATATGAGTGAGGCTTTTTTTTCTTTTGTTTTGTCATTTGCATTAAAGTTTTGGAGTTGTATCTTATTGGTTTCATTTGAAAAATCTCATTACACTTTCATTTCTGTAATTGTTTACCCCTTTTTTGTTACATGTTTTTCCATAG
Seq C2 exon
CCATTCTTTGCCCCATACCTTTACACGCCAAGGTATTACCCTGGCGGCTCCCAACATCTCATCTCACGTCCATCAGTAAAAACGAGTTTGCCCAGAGATCAGAACAATGGCCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134313-KIDINS220:NM_020738:24
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.371 A=NA C2=0.447
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)