MmuINT0086558 @ mm9
Intron Retention
Gene
ENSMUSG00000036333 | Kidins220
Description
kinase D-interacting substrate 220 [Source:MGI Symbol;Acc:MGI:1924730]
Coordinates
chr12:25723189-25725434:+
Coord C1 exon
chr12:25723189-25723415
Coord A exon
chr12:25723416-25725320
Coord C2 exon
chr12:25725321-25725434
Length
1905 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
TGTTACATGTTTCTCCATAGCCA
3' ss Score
9.3
Exon sequences
Seq C1 exon
ATGTTCGAGCTGCAAGAGAACAGATCAACATAGGAGGCCTTGCGTATCCCCCGCTCCCTCTGCACGAAGCCCCTCCTCGGCCTCCTTCTGGGTACAGTCAGCCTGCATCTGTCTGCTCCTCCTCAGCATCTTTCAATGGGCCGTTCCCAGGCGGCGTTGTGTCCCCACAGCCCCACAGCAGCTACTACAGCGGCCTGTCGGGACCCCAGCACCCTTTCTACAACAGG
Seq A exon
GTAAGAGTCGGCACCTCGCCTTTACAGTGTCTCTTCCCAGGGGCACCATCATTCTGCCATCTCCAGGCTTGGGCACTGGTTTGGAGCTATAATTTGGCTTTAAAATAGGAAAGTCTAAGGCTTAAATGTACAAGTGTATGATTTTTTTTTAAAACTGAGTCTTGGATTTTAATATGTTCTAGAGTTCTAAAGAGTGTGAATATAAGAATATTGGCTTTTATTTTCTTGTTAAAGGAAACACTGTAACAACAATGGTTCCTTTGGTATATTTTGTTATAGAAATTTATATTGGCATTCATAACAGTGATAAATTCCTAGAGTCATTCATATCCTTAGACATATGTGAAATAATAACGGGCCCATATTACTTGAAGGATCAAATGTTATTGCCAGTTAATTCCACCATATGCCATTTTAATTTTAAATACCTTTAGTCATATATAATTCTTTGCTTAATACACAATTTATTAACTAAAAAATAAAAGCACAGTTTCCAGTGGTACCCAAACCATGTTGGATGTAGTTGCTCGAAGTGTCTGTTCTCATCTTAATGCCCTAATCGTGTAATGACACTAATGATTTCCTGTAGGAAGACGGATCATGAGCTGTAGTATGCTTTGTGGAATCCTACTTTTAAAATCCATTGTAGGTTTTAATCCTCCTTTTCTCCCTGGTTAGTGTATAAGGAAAACACAGGCTAATATTCATAGAGGACAACTGACTGCAGGACTTTATCCATAGGAGCTGGCAAGGAAGAGTTTGGGGAAAGTGTGGCAAAGAAGGAGTTGAGAATTTAAATTAAATTGTTATTTTTTAAATATCTATATTGGTAATTAGCTTTGTTGTTTGTAGAGCCTTAGAAATGTAATACCATTTTTCTGTGTGGACAAGACAACACAGGAGCACTCATGAGAATGTTTGTTCTCTGTCAAAATTAACTGTGTGGTAGGTGGTGTGGAATATAGATCTGCAGTCACTAGTCTTAAAATCTGCTGCAATTTTACATAAGGTGGCTCAATTAATACTAATTAGAGGTGTGAAAATATATTTATTTGAAAAAAGTTATGAAACTATGCTGGTATCTTACATTCATCATTCATTTATTTTAAGAGCAACAATGTAATATAATTTTAAAGTATCTAATTATTTTTAAGACATTAAAGTTTCTCTTATGTTTTTAGGTTTAGTGTTTCTGTTATTATTTAATGGTATTATTCATACAGTTGAAAGTCATAGTAATTCTATTCTCTTAAAGTGCCAGAGTAAAGAAGAGAGAAGCGGCCACCTCAGTGCAGAGAAGCCTAATGAATTCTGACCTTTATGTTTCCAGTCCCTAGAATCTGATGTGTGAAACCAGCTACATGTAAATTCGGAAGTTAAGTCTTGTGTAGCTAGCAGGCTCCCCGTCTCATAGTCTAGCGTGCACTCCGGTGCCGGGACACAGCTGAGCTCCAGGGCCCCCCAGTGAGGTTGTCCTTGGAAACACTGACACTTGTTTCCAAGTGACCAGGGCAGTTTTGAGTCTTAGTAACTATTTTTTTTTTTTTTTGGTAAGGCAGAGTATTCTGTTAACATTCTAGTCAGTTTTAAAGAAGAATTTGTTAGTTAATACATAGAAACCATGTACAGCAAACTTGTTAAGATGCTAAATATAAAGCAAATGTTTGTGTTAAGTCACGAGGTACAAAACTTGAGCTGTGTTTTAAGCCTATGTCTGATGAAGGAGGCAGTGTCATTGTCCTAACTCTGGTCTGGATCTCAAGGCCAGCGGGAGCATGAGACTTTTGTTTTGTCACTTGCTTTTGAAGTTTGGAGTTGTGTTGGTTAGTTTCACTTGATGACTCTCATTACACTTTGATTTCTGTAATTGTTCATGCCCTTTTTTTGTTACATGTTTCTCCATAG
Seq C2 exon
CCATTCTTTGCCCCATACCTTTACACGCCAAGGTATTACCCTGGCGGTTCCCAACATCTCATCTCACGTTCATCAGTAAAAACGAGTTTGCCCAGAGATCAGAACAATGGCCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036333-Kidins220:NM_001081378:24
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.311 A=NA C2=0.395
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCGAGCTGCAAGAGAACA
R:
GGCCATTGTTCTGATCTCTGGG
Band lengths:
338-2243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: