BtaINT0091678 @ bosTau6
Intron Retention
Gene
ENSBTAG00000034140 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr10:12721325-12729093:-
Coord C1 exon
chr10:12729037-12729093
Coord A exon
chr10:12721549-12729036
Coord C2 exon
chr10:12721325-12721548
Length
7488 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
AAATTTCTCTTGCCTTGCAGATT
3' ss Score
10.21
Exon sequences
Seq C1 exon
GTGCTTGTGGAACGGACAGACGTCAGAACACATACGTTATGGACAAAGGCTTCAAAG
Seq A exon
GTAGAGTATCTAATCATGATGTACCATTAGGAAGGCTAAGAAAGATAAAGAATGCAAATCTGAAATCGCCAGGGTTTCTACCAGAGACAAAACTATGCATTTCTTCCCCTCATTCCCCCAAAAAAGTTAAAGACCACAAACCTGGGACGGCTGGGTAGCTCTGCCCAGGAGGAGCAATCATAATAATAATGATTTCATCTTTTGATTTCAGTTGAACCTGCTTAGGAAATGCTTGTGGGATTTTTTATAGATGCCAACTAAATGTCTTCGGAAATGCAGAACGTCATTATCCTACCAATTAGTATGAGTTCAATTGATTATGAAATCTGAAATAAAGTCTATCTACTTGCCCCAGAGGCCTCCTGTCATTGCGCTGGCGAGGAATGCCACCCTGCACCTGCTGGCTTTCTGGGGTGCAAGGAATGAAAATGACACCTAGAGTTACTATTGTACGATGCCCCACCTTTACAAGGTCTCTGTCCCATAGAGCAGGGAAGCTAGGACTAATCCCCAGCACGCGAGAACTGCAAGTCAGATCATCCCTCTAAGAAGTATACAGGTGAAGCCACAGATGAAAGGTCAGGTCCTTTCCCAGGCTTGGGGCCTAGGTTTAAAATGAAAGAATGTATGAAATAGGCGGCTTTGAAATTATGTCACTTATTAACTATGACAAACCTCTCCAAGGCCCAGTTTCCTCAATTACAACGTTGAGATAAGTATGCTTGTCCTACGGTCTAACAAGGTTACCCTGATTATGCAATAAAAATCACAAATTGGAAGAGTTTTTGCATATTGTACAGGATTATACTGATGTAACAGAGTTGTCCCTTTGTCTCTGAAATCTATTCAAGAATCTCAGCCAGGGACTTCCCTGGTGATCCAGTGCCTAAGACTATGCTCCCAATGCAGGGGGCCTGGGTTCTATCCCTGGTAGGGGAAGCAGACCCCACTTGCCACAACTAAGACCTTGCATAGCCAAATTGAATTTAAAAAAAAGCAACTCAGCCAAACTGAAGGTGATAAGACTTACAGCAATGATCCCAGTGGATATCCTAAATCTACCTGTGTACCAGAATCACCTGGAAAGCTTGTTAAAAATATAGATGCCCACACCCTGCGTCCCCAAGATTCTGATGCAATAGATCAAGAGTGCTGAGTGCCTCAGGGTATCCTTACGTAGCAGATCACCGAACACTTAGAAACCACTGGTCTAGACTGACTCAGATTTCTCATCAGATTTAGCCTAAGACATACCTAAGACACAACTATTTCCTAACCAAGGAGAGCTGGTCATATACAGCCCTTTGTGGGGTGGTTACTAGAAGTAGGGTGTGCTAGGGGCGGGTGGCGGTGAGCACTGTGTTCTGAACAACAGAGCAGGAAGAACAAGTCTCCACCAGAACATGTATGTGCCCTGCCCAAGAGAACTATCTGAGGACAGGAGGCCACCCATAGGCTCCTGGTCAGCCAAAGAACCCTACCCCCTTGGGAGCATCATTCTGGCTTTTTTTTTTTTTTGACTTAAACCACCCGAATGAAAGCGAGCACCATCACAGTAGATGAAGCTAAACAAAAGAAAAGACAACTATACTGTTTCATCACCGTGATCTTGGACCTCAGTTTCTTCAAGAGGCATGGGGACTGGACAAACCTCTCTACGGGCCCTTGACAGCTCTGAGAATACCCATGACTCAAGCCTGAACGAACCCAGACAGGCCCAGACAGCGCAGCACATGAGCACACACTTCCCAACGCACTGTGTGTCCTGCACACTGTGGTAAGGGCTGTCCCTCACAGCCACGAACGCGAAATGCAGTTAAGGACAGCAGTGTCCCAGCCTTGGCGCCATGCACTCCTGTTTTGTGGGATCATCCGAGTCTGAGTGCAGGGGAGGCCGAGCAGGCTAGCGGCCAGGTTTTGTTTCACCACCCTATAAATCTGATCCTCTAAATTGGAGAGAAAAGAGGACTATATAGGCAAATGTACCAAAAGGTATTAGGGATCCACACACCAGAAACCACAAGAAAACAAAATCACAGGTCAGAGCTTTACGCGTATCAAGGACATGGAATAAACCCCACCAACTCGATGTCCCCCAAAAAACATTCAATAAACAAGTTATGTACCAGGAGTGCAATTGTTACCTAAAACTACTGGGCCAGACCAAATCAGTGGTTATCGGGGTTAAGAGTATTAGTGTTCTCTGAACTCAGTGGGAAAGAGACCTGATCTGGGAGTTAAAAGATTTGGGTTCTGTGGGGGGAATTCCCTGACAGTCCAGTGGTTAGGACTTGGCGCTTTCACTGCCAGAGGCCACGCTCAATCCCTAGTTGAGGAATGAAGATTCTGCAAGCCCCAGAACTCAGACAAAAAATTAAAAGAAAAAGAAAAGAAAGAATTCTACTCTTGGTTCTTGCTGTGTAGCACCGATTAGATCACGGTGCTGTTTTCTGGGTCTTGGTTTCTTCCTCTATTAGGACAGGGTCTCTAAAGCCCTTTCCAGCTCTGACATGCTAAATCTTAACGTAATTCAGTCAATGCTCCCTCTCTCCCGCTACTTCCTGAAGACCTCCCCTCACTGTCACCCAGGAGGTTGCATGAGACCACTCATACTGCTAACCCCATTTTCTCTCTAAACACCTTTCCATCTCTCCTTCCTCTTCCTGACCCTCAGCACAATTATTCCCCAACAAACTGCTTCATGACAACACTTTTCTGTCATGCATTTCAAAGTGCTACAGAAGAAATCCTCCCCACCGGTCTCCATCACCCTTCTCCTGAAATCCTGGGTCCTGCTGCTGCTGCCGCTTTCCCCACCTGTATGCCCTTGCTAATGCAACCTCCAGGTGTCTCCTTGCAGTAACCGTGGCTTCCAAGCTCGTCAGGAGCCCACTGACATCCTGAAAATTGTTTTCAGCCAGTTTTTTCCCCTCCCTCTAGTTCTCCTTCTGGCCCTGAGATCTCCCCAACTCCTCTCCCCAGTCCTTCTCTCTCAATCAAGAGAAAGGTGAGAAGTCAGGGCCCAGGAAGAGAAAAGGCAGTGCAGCCTCCTAATATGAGTAGGCTGAGAAGAAGAGAGATGGGTATTTGGTGCCTGGGTTTTCAGCAACAGTGAAATATTGGCCTTAACTAGATGATAATGTGAACCTAAAGGCTGGGGTTGGGTTTCCCTGTTGAATCAATGTTAAAGAATCTGCTCGCCAAACCAGGAGACCAGGTTGGATCCCTGGATCAAGAAATCCCCTGGAGAAAGAAATGGCAACCCACTCCCGTGTTTTTGCCTGGGAAATTCCATGTGGGCTATAGTCCATGGCGTTGCAAAGAGTCGGACACAACTTAGTGACTGAACAACAAAGGCTAGTGTTAAGTTCAAATCCTACTCACAAGGTGGCCTTGGAAAGTCATTTCCCCTCTCTCGATTTGCTGCTTCCATTATAAGATGAAGATGTTTCAACCAGCTCATTTCAGAGACCCCTTCTGCCTCTGATATGTGGCTGTACGTGATTTGGGAGAGGTAGGAACTATGTGAGTAGCAGTGCCAGGGCATTACAGGGCTACATCTGCAGGCTTGATGCTAATTACAGGCCTTGAAGAGCTTGGGTAGCCTTGCTTGAAGCTTCCCTTTTCTTTGCAACACGCCCAAAGTGCAGACACTGGCACAGAAGTGGGGCTATAAAAAGATGAGGAAGTGTCCTATAGCAGCTGGTTATTCTTCCCCTTGCCCCGCCCTCCCTCAGGGCAGGCAGGTAGATGACTCATCTGGAGAGAGGAAGAGCTTCCTGAAGTATAGTTTTCCAGCTGGCCTTGCCCTTCCCCTCCTTCCAGTCCTCAGAAGTAGAATCCAGATTATTCTATATTTCAACACCCTCCCAACACCACCTCAAAACACACACGCGCATGCGCACACACTCTTCTCCATCATTCTGTCTTTACCTCTGGCCCCTTTACGGATGATACAGCTGCTCCCTGAAGCTAGCCCCTATTCCCACAAAACCCAGCTTCTCTTTTATCCAGTTAGGTGCATCCCCTGCTACAGAGCAAACTCTTTATTTCCCCAAACTTGAAAGCAGCCAACTTTTCTAGTGGATACAAGAGAAGCACTACTGGTTGGCTGAATCTCTGTTAGGCAAGGAGCTAGAGTGTCAAGGCTTTCCCAATGCTATAAGAATTGGTCATGGGATGTCCACAAAAAGCCTACAGCTTGGGTTTCTCAGCAGAACTGGGCCCCATAGATAAAACACCTTCCTTGTTGAGGGTGAACTGTATCTTTAGATACAGTTTGCAGTTAGGATATAAGAGAGGAGGTGGTTGTAGCTAAGTCAGGTCCAACTCTTCTGTGACCCCCTGGACTGCAGCCCACCAGGCTCCTCTGTCCTTGGAATTCTCAGAGCAAGAATACTGGAGTGAGCAGGCATTCCCTTCTCCAGGGGATCCTCTTGACCCAGGAAGTGAGCCCCAGTCTCCCAAATTGCAGGAAGATTCTTTACCATCTGAGCCACCAGAGAAGCCCATAGACAGGGTAACAAAATGTGAGGGGAAAACATCTTGATTGGGTATCAGAGAAGGTAGGGGTTGTCCTAACTTACTAACATTAGGCAAACTTCATGAGCTTTAGTTTCCTCATTTCTAAAGTAGTAATACTAGTCCTTACTGCCTGGGCCCCCTGCACAGATGTAACAAGAATCAAATGATCTAACTGGAGTGAGCGGAGCCCAGCAATGTGTGCTATAAAGCGAGCTATCATTAATCATCCAATTTTAGAAAATATGTAACTGAGTCAGGTGCCAATCAAAGCAAAAGGATGTTCCTGCATGGGGAGGAGGGGCGAGATGTAGGACTTCCCACTCAGGCAGCAGCCCTTCTTGAAGCAACACTGGAAGGCCTCAGCTTCCATGTGAGCAGCTGAGTCATAAAGCCTTACTACTTGGCTGGGAACCTCAAGTGGGAACAGCTCGCCAGCTGGGGTTCTTGGACTAAATTAACCCCAATCCACTTATACTAAGGAACAAAGTATTCACTAGAAGCAATTTAATGTGGCTCAGGTAGGTCATGACCAAGGACCCACAGCCACCTTCCCCCCATGAGCACCTCGCCAGCAGTTAGGCCAATCCAGGCTCCCTTCAGTCTCTGCTAGGGCTGGCTGGGACTGCTATCTAGCGAGGACGTTTTCTCGGGACTTCCCTAGTGGTCCAGGGGTTAAGAATCAGCCTGCTAATGCAGGGGCATGAATTGGACCCCTGGTCCAGAAAGATCCCACCTGCCGGGAGCAACTAAGCCTGGGTACCACAACTACTGAGTCTTTGCACTAGAGCCCGGGCGTCACAACTGCTGAAGCCAGCTCGCCTAGAGCCCGTGCTCCACAACAAGAAAAGCCACCACAGTGAGCAGCTGGCGCACCACAACCAAGAGTTGCCTCCACTTGCCACACTAGAGAAAAAGCCTGGGGGTAGCAACGAAGACCAAGGGCAGCCAAAAATAACTTTTAAAAAATATTTTCTTGTCTCTAGGGTTCTAGGCTAGAGAGGACACAAGGCTCACATCTCTCTCTCTCTGCTTGTGGGCTAAGTTGTGACACAACGTGCTCCAAGCCTGGTTCTGGAGCTTACTTTAATACCGACGAGCAGTGTGGGACCCTGGGGAAGTCACTTCCCTATTCAAACCTCAATTTCCTCATAAGCAGTAAAGCGGAAGGGGAAATAATAATTACTGCTGTGCCTACGCTAGAAGGAACTAATAGGTGAATGCAGTTTTGTACAAGATTGAGGAAACGTTAATTGTTAAAACAAACATAAATAACCCTTCACTAACAAAGAAGTGTTAGTCGCATTTGACTCTGTGAACCGATGGACTATAGCCCACCAGGCTCCTCTGTCCATGGGACTCTCCAGGGAAGAATACTGGAGTGGATAGCCATTCTCCTCTCCAGGGGATCTTCCTGACCCAGGGGTCAAACCTAAGTCCCCTGCATTGCAGGCAGATTCTTTACCAGCTAAGCCACCAGGGAATCCCAACAAAAAAAACAAATCCCCTCCAACCAGTTCCCTGTTGTGGGAGCAGACTCCTGCGGCGGCACACATGTCGGCCACTGCAGCCACGTGGAGTGCCCTGCTCTCCCTGGAGGGACCTCCAGTCACCTCCTGAATTACATGACCACTTCCACTTCTTTACATTTTTATTAATTTCACAAGTTGGAGGCAGAAGGCACAGATAAAGAGCGGCCCAAAATGTAATCTATGGTGGTTCTAGGGAAAGAGCATCTGAAAATTTTACCATCTGCTACCACTTATAGAAATTTAGAGCTGAGAAAGAGAGAAATTTCACCATCTGCTACCACTTAAAAGAAATTTAGACTTCTAAGATCACTCTTGACTAAAGTCCCTGCAACTCAGTGCTTATTTCTAGAGCCCCCTGGCTGGCAGAGCCTAGAAGGAGGGCCAGAGCTGCCGGATTAGAGTCTTCTGCTTTTTCTGGGCAAATTCTGCCACATTTGAAACAATCAACAGGAGGCAGTAATTTTCCCCCAAAAGGGAAAACGGCAGAGAGACTGAAGGAAGGGTTCCCCTTTCCTTGTGACTCCCAGTGACAAAGAAAACCTTCTTCCTCCAGGGAGCTACAGTTACCTTGCTTCATATTTGGAAATTAGTTTGCAACCTTTCATACCCTAATATACTCGGAAGTCTTAGGGATGACACACCTGAGAGACGCTAGGAGAAGCAACGTTGAGTTCTCCCGGGATCAGAAAAAGATTCTGCAAAATTAGACTTCAGTGAGCATTCACAAGAACAGGAGTAAGTGACCCCACAAGATATACTGCAGGCTTGCTAGAAAACAGGAACTTTCCAAAGCCTCACTTGAAACCAAGGTACTTTTTAAACCTGTTACACTTCAACCTGCCCTGCCTCTCATCATGAGCTTCGCGAGAGCACGGGTACTACCCGTGGGCTGGCTAAAGGTTGCCAAACTGCTGACACCTGTGCCGAATCACACACCTACTGCCGAACCTAAGCTTGGTCGTCAAAAAGAATTCAGAAAAATGATGTCACAGAAAACACACAAGCCGAGGAGTCCCGAGGCCTGGATTCAAGTACTGGCACTGCCATGCATGTGCCATGTGACCTCAGCCAAGTCACTTCAGCTCCCTGGGCCACCATCCTCTAAAAGGCAAACAGTCAACTATCCTGGCAGGATTTTGTAAAAATTAAACAACAGATGTGAAAGCACATTATGAACATCTTGAATTAATCCCTTTCTGATGCTCTGCCTGACTACTAAAACAAAAAAGTTCTTATCCCCCCCAAAACATGTTTCTTTAAAAAAAAAGAACTCTGCTTACCTCAGAAAGCATTTCTCAACGTAGTTAGTAAATGAATCTTAGACTGTCATAGGCATTTACAACTTCACAAGTCTGACAGCACATAAACTGTACTCTGCTTTTGGTATTTAAGCGTATGTCCTTGTTTGTCCTAAGAAATTTCTCTTGCCTTGCAG
Seq C2 exon
ATTACATGAAAGAATCCGTGTGCAGTTCTAGCACTTGTTCCTTGAATAGCAGTGAAAACCCTTATGCCACAATTAAGGACCCACCCATCCTCACCTGCAAGCTTCCAGAAAGCAGCTATGAAGAAATGAAGTCGCCTGTGCACAGGGGGTCTCCGTACACAGATGTGCCATCCTTGTCGACATCTAATAAAAATATATATGAAGTTGGTAGGTGTCTCAAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034140:ENSBTAT00000036967:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.230
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development