GgaINT0027391 @ galGal4
Intron Retention
Gene
ENSGALG00000007631 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr10:17667101-17671900:-
Coord C1 exon
chr10:17671844-17671900
Coord A exon
chr10:17667308-17671843
Coord C2 exon
chr10:17667101-17667307
Length
4536 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
ACTCCCATCTTGTTTTGCAGATT
3' ss Score
11.06
Exon sequences
Seq C1 exon
GTGCTTGTGGGATGGATAGACGTCAGAACACATACATAATGGAAAAAAGCTTCAAAG
Seq A exon
GTATGGTATCCAGTGCCTGCAGCCACCCTGGCAAAGAGTTTGAGAAGGGTGTCGTAGAAGAGGTGAGATAGGAGACCTGGGCGCCCGGGCGAGCAGCCGTGCAGAGGCAGAGAGGGACAGAGCAATTACCCACAACATGAGCCCACGTGGCTGTCTGGGATCTGCGTTATGGATGTGAGTCTTTGCCCAGATGGGGGCTCCTGCCTGGCAATGCAGCACAGGAAACGAGGCGGGTCTGTTGCGGGGACAGGATGTGCAGGTGGAGGGGAAGCTCTTCTAGGAGCCAGCAGCCATCCTACAGGGCTTTCTGGTGGCCGTTGCTGCTGACAGAATGGTGTGTTGGTCTGCTAGGTTGCAGCTCCATAAGGCTCTCAGCCATCTAGAAAAACGGCTGACCCTGCTACATGGCCTTTGCAGAGATTTATAGCAGAGCCTGAGAAAAGACCTCAGTGCATTAACCAGTCGCACTGGCACGAAGTAATTAATGGGCTCTGACTCTAGGGCTGTTCTAAAAAGGGATCATGCGTGAGTCATGTAGAAAGGCCCAGTGACTTTATATTTTGGTTGTCCTTCAGACTTGCATTCAAAATATTCAGCTGTGCATGAACTGCACTTGGCACAGTGTGGGCTGCAAGCACCTCAGCTCCTGCCCTGCGCCTCAGCTTGGGTCCTGGCCTGGCTGCCCGATTCCAGCACTGTCAGCTGGGCTCAGCCAGGCCCGGCTCACTGCTCCAAGGGGCTGAGCTGCCACAGGGCAAAGCCTGTATGTGCACTGACAGCAATGCTGCTGAATGCAGTGCTGGTACAGGCAGCAATGGATGCTGACAGCCCAGCCTGGGAGCGCTGAGCGCCTTGTGGCTGCTCTCTACAGAATAAGGCAATGTAATATTTGGTAGAACGGGGCCTTACAATACACTGAAGGCAACCAATGCTCCATGGCCAAGGCTTTCTTGACAAAGCTAAATTTAAAATATTAAGGGGGTTACGCGTGTATATCCAGCTCAGTCCTATTTCAGCTACTTCTGAAAAAAAGGAAAATCTTTACAGCATAGTTAGTTGTTCTTTTTACATGGGACTATTAATTTCAAGATTAAATTACTGTATTTAGAAGGTTAGAAAGCTGCTCTGAACAACAGTCAGGCTTCCCGCCCAGGGCACAGTGACACAGAGGGGATGTATCCATGTGACAGAGGAAAGGACAGCAGGAGCGAGCTGTGAAATGCAATTTCTACTGTGACATACTGTGTTTATTATCTGGGATCTGAGCTGCTTTCTTTCCATGTCTGTCTCCTTAATGAATTCAGAACTCGGGACCAGAAGCCATGTCAGAAAGGCCAATGGGCTCTTAGGGCAGCAGGGCAGGCCGGCACAGGGACCCCTTGGGGCAGTGAAGGGCTGGGAGCCCCCGTGCCCACCCTGTGCCTGGTGCCGTGGTGTGACAGCAGCTGAGCTGTCACTGCGTTTTGAGGGCAGTTTCTTCCCTGTGTGTGGTGCCCATTGCTACCATTTCCAGCTGTTCTTTACAGCTGAGTCCTTTTCAATCATTTATTTATTTATTTATCAGTGAATGCTGATGTGCTGGTGGGGTAATGTGACCTCAGGCACTGGCATTTTAAGGAGGTTCCCTTTGTGTGATTCCCAGTGAAACCCCAGCAGTTAGGATCACTGATGCATGGGAGGCTCAGGGCATCACTTAGTGCGGGTCGTTTGCTTGTTGTATGGGAATATAACTGTGTCATGCTCGCCTGAAGCAGAGCAGAGCTCTCTCGGCGTTGCTGTCCTTGCAGCAGTGAGGTTAGCCAGGGAAATGGAAGCAGCCATAAATGTGATTAAATAGCAGGAGAGCGTGTTTTACCTGTGTACATCATATGTCCTTAGCACTCTGAACATGAAAGTAGGTATAAGGCTTGTCGTTATTAAGCCAGAGGGTATTCAGAATAGAACAGAGTAAACCGGTCTGTGGGAGGGACACGTAGATCCTGGTGATGAAACTAAAATCTCCTTGAAAGGTGCGTGATGGGCATGCAGGTCCCAAAGATGGGACCTCTAAGCCAAAGGAACCCCTTCCCCCCGCAGCAGGCAGGGTGCTGAGCCAGGGATGGTGTGGGCACAGCAGAGCCCAGCACCCACGCACGGCCCCGGGGCAGCTGGACTGGGGATGGCTCAGTACTTTTGAGACGAGTTAAATTAATTCATGGAATGAAATCTGACAAGTGATGCCAGACTTTTTAATTATCCCCAAATTACCTCCATAACAAAGTAAGTCAGAGGCTGCCACATCCTTCAGTTAAATTCCTTGCAATCTTGCGCACCATGTCCTGTGGGCTAATGGCTCCCTGGTGTATAGCATGTTACCCAACGTGCTCTGGTGCTCTGTAAATTATATCATATCTGAGCAAAGGGCCTAATCCCTGGATAGACACAAAGCTCCCACTTACGTCAGCAGGCGTCGGTTCATGGCAGCACTGCCTATGGGAAAAGGCAGATCTTGGGACTGCCCAAGTGATTGCAGCGAGCCCCTGTGCTGTTCTGCTGGCCCCATCTGCATAGGATGTAGCAGTAGTGTCGGTACTGCGGGGTCACTTCTGGCTCAGGAAGATAACAGTAGCTGAGCTGGATGGAACCAGATCACGTATCTGGGCTGAGTCCTGGTGGTGCCTGCACCAACGCCTCGGCGAGCTCGTGGCTGCTCGCTGTGGGAAGTGTGTGGTTCTTCCATGCACAGCCTTCCCAGCGGGGACTGAAGACTGGGAACCAGTACATATAGTACAGGTATTTTTAGCCTAAAGATTTTCATTTCATTATAGAATTGGCTAGTCTTTGCTGTCTCCTCACTTTTGAACACTAGTGGGTCCTAGACTGCATGGCACCTTGATTTAAGTCATATACGTATCAAAAGCTAGTAACCCTGAGATCATTCAAGCACAAAAGCCTTTGGTCTTGCAGGGTTGCTTCACTGCTAAAAGGAGAGGACAGGCTTTCACCAAACTGCCTTTGCTGGGATCACATTGCTGGCCAAGCCCCGTGCCAGCAGCTGCGTGTTGCTGGGATGCACCAGGCTTGCTTCACTGTGAAGTGAAGGCATTGTTAGATCTCACCCAGGCTGACGTCAGACAAGCTTCTAAATTTTAATTACTCCATAAATACTGCACTGGTGCCAGGGCCTCTGCCAGCCTCCTGCTTCCCTGACCCTGAGAGCTGAGGAGCCCAGAGATTGGTTTGTATTGCTAAAGCTGGAGGAGAGAAACGCAGTAGCTCACTGCAGGGCACGACCTGAGCCCTTGCTTGGGGCACCTGCTCAGCGCCAGCCCCCGTGGGGACTGAGGGACACGCACAGACACAGCCCCAGGTCACACTGGTGATGCAAACTGGCAAGTGAGTTAGCAGGACGGGGAGGAGAAGCGCAGAGATGAGGTTTTTATAGGAGAAGCGATATCTTGTTGTCTGTCTATTTCTTAACCTGAATTTCTCTTTTTGTCTCCCATACTAGACAGCGGGGGCAACTGGGATTGCAGCTATTTTGCAAGTCCCGCTATTTCACCGGGAGTATTTCATATATACCAGGATCTGCCTTTGTACTGTAACCCAGCACAAGAAAATGCCTCATCTTTCATTGCATCGCTCTAATTCTAAATTAATGGCACTGCCCAGCAGGATGCACACAGCAGCAATGGCACGTTCTTAAATGTCAATGTTAAGATCTATTTATTCTGTTGTGTTTTTTTTTATTATTATTATGTAAAGCAAGACTGGCGCTGTACTTTGCAGCAGGCTGGCATACCCAGCCAGGGTCACCAACAGGGGACACCGGTGGTGCCACTGTGCGCCAGCCTTGCTCTCCCTGCTCCTCCATCCCCATCTCCTTCTTCCAGCCCAGGGAGAGGAGCAGTAGATTCCTACAGCACGGGGGAAGAGAAGTGAAAGTGAGGTTCAGAAGGAGGCTTGTCCCCCTGTGGAAAGCGAAGTGTTCCCTACTAGCAGGAGCCACCTCCTCCCAGTCTTAATGGCAGAAGGGAATACAAACAAACCAGATTCTCCTAGTGCTGGAAAGCCTCAGGAAAAGAACCCCCAGGGGGCACAGCACATATGCTGCATTGATGCAGTTCTATGCCTGCTGGAAATATCTCACTTTCAAACAGACAACACTTGATGTACCCAGAGCCCCCAGGACGCAGCTGCTGGCGGATCCGACCCACAGCCACATGCATGGGCTGCAGGTTACAGCAGAGCTCCTTAGGAACGGGAGAGGGAGGGAAAAGATTGCCACCAAAAATTAACAACTGCAGTAAATGACAACTAGAACCTTTCACAGCAAAACCTTTTGGTTTCAAGCAGGTTTTTATTTCTTTCCTGCTAAGAGAATTGCGGATGCAATGGTTTGGACACACCCAGAGCACAAGTGTCGGGTGTCTGTGCTGGATGCTTCGAGGATCTTCCTTTCCCCTGCCCCCTTCTGCCCATCCTGCCCCTCCTGCAGAGGTTGAGCTGCAGCCCACCTAAGGAAGCTAACAGTCCCACTCCCATCTTGTTTTGCAG
Seq C2 exon
ATTATATGAAGGAATCTGTGTGCAGCTCCAGCACTTGTTCTCTGAACAGCAGTGAAAACCCATACGCCACCATTAAAGATCCCCCCATCTTAACATGCAAACACTCCGAGAGCAGCTACGTGGAAATGAAATCGCCTGGTCACAGGGACTCCCCATATTCAGAAATGCCCACTTCATCAACAGCCAACAAAAACATCTATGAAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007631:ENSGALT00000012349:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.443
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]