MmuINT0097644 @ mm9
Intron Retention
Gene
ENSMUSG00000036466 | Megf11
Description
multiple EGF-like-domains 11 [Source:MGI Symbol;Acc:MGI:1920951]
Coordinates
chr9:64547904-64553740:+
Coord C1 exon
chr9:64547904-64547960
Coord A exon
chr9:64547961-64553533
Coord C2 exon
chr9:64553534-64553740
Length
5573 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
AAATCTCTCTTGCCTTGCAGATT
3' ss Score
10.45
Exon sequences
Seq C1 exon
GCACTTGTGGAATGGACAGACGTCAGAACACATACATTATGGACAAAGGCTTCAAAG
Seq A exon
GTAGAGTATCTAATCCTGATGTCCTGTTACACAGGGCTTAGCAAGGGATTATAGACCTGAGGTGGCAAGGAATGCTACCTGAGAGAAACTGCAAAACCCAAGCCCCTTAAAAAAACAAAAGCTAAAAGGATCACAGGACCCAGAGCCACTGGGCAGCTCTGCCCAGGAGGAACGATCCTAATAATAACGAATTCATCTTTCCATTGCAGTTGCACCTGCTTAGCAAACGCTTGTGGGTTTGTTATAGATGCCAGCTAAATGTCTTCAGAAATGTAGATCATCATTATCCAACCAATTAGTATGAGTTAAACTGATTATAAATCTGAAATAAAATCAATCTGCCTGCCCCAGAGGCCTTCTGTCATTGTACTGACAAGGAAAACTACCCTGCACCTGCTGCCTTTCTGGGGCACAAGAAATGCAAATGATACCCAGTGTTAATACTGTATGGCCCTCACCCTCAAGAGATCTCTGCGCCCAAGAGCAGGGAAGCCAAGACAGATGTCTACGCCACAGGAACTACATACAAGGTGGACCATTCCTCTAGGAAGTCTACAGGTGAAGCCAAAAAGCAAGCACCAAGTCCAGCCCCTGGATTAGGCCCTAGGTTTAAATGCTGGGACACGTGAGCTAGGCAGGGAGCTCTGGAACTCTGTCACTTATTAACTCTGTGCTTCCTAAGGTTGTTTCTTCATCTGCAAGGTTGGGATAATTATGCCTGTTGACTCATGCCTGTCTTATTATCTAACAAGGTTATCTTGGGTGTCCAATAAAGTCGGATGGGAAGTGCTTTTGTATATTATAAAAGTGGTATCAATGTGATGTCTCTGGGAAATGTCTCAAAGTCTCAGTCAATTGAAAGAGCAGTAATAAGTCAGCAAAGATCCCAACTGATATTCTAAATCTAGCTCTACACCAGAATCACCTGGCAAGTGTGTTCAAACTACAGAGCTTTACACTCACACAGATGGGGCCCTGCACTCTGCAATTGCAAGGAGTACCTCAGGATATCTTTATGCATTTCATTACCCAACTACCATTTGTCTAAACTCTCCCAGGTTTCTGTTCTGATCTTTCAGACCTAGCATGGCCATCTCCTAACCAAGGAGAGCAACTTGTGTACCACTCTTGGGGAAATGGCTATCAGAAGTGGGATGAGCAAGACCCAGGTGGCATTGAGAACATCAAGGCTGAGTGACCATCAGCTTGGTTTAGGATATGCAAACCCCAGGAGACCTGTCTGAGGAGGGAGGCTATTCCTAATCTCCAAGCCAGCCCACAGGCAGTAATCCCCTGGGAGCTTTATTATGGCAAGTTTCTGAGGGTTCTGCCTTAAACCATCCAAATGGAGGCAAACATCATTTCAGTGAGGTTGCCAACAGAAGAGCAATTGTACTACTGAGTCATTGTGACCCAAAGCCTCAGTTTCTTTCTCAGAGTGGAATGGGGACAACACAGCTCTTCCAGGGTCTTTGAGGCTTTGAAAAGAAGTATGACTCAATGGAGAAGAGCTCAGACAGGCCCTGAGATTAGCATCCAAGCACACTTCCCCATACACCTTGTCATACTGTGCATGGTGTTTCGGGTAACTACTTTTAAACTCTAAACCATAAATGTAAAACAAAGCCAATGAAAGCCAGTCTCTGCCTTCATCATTGCATTCCTGTCTTATGGGATCATCTGAGTGCATGGGAGGCTCTCACAGGCAAGCAGCCAGATTTGTCACTGCTTCTAATCAGCTTTTAAATTAGAGAGAACTGTGTAGGCAAATGTACCATCAAGTGCTGGGAGCCAACATGACACAGTAAGAGTTCAAAGAGAGGCAAGTGAAATACTAGTGTACAACTTTATAGAAAAGCTTATAAAACACATGGAACAATCCTACCTGGTGGCTAAATTCCCAAACATCTGGATCAGCTATTTCATGTCACCAATTTAAACTATTTCCTAAAGCATCAAGGGCAAGGCCAAACTCAGGACTAATTAAAGAGTCTGGATGTTTTCCAAACTGTGAGGGACAGAGGAGGGCGCAGAGAATGAGATGATCTGGGTTCTAGTTCAACTGCATGGTGCTCACTAGACACAGTAGTATCTGTGGGTCTTGGCTTCCTCCTCTTTAAAAAGCACAGTTATAATAGCACCACCGCTAAGGCCCCTTACAACTCTGATGGTTTAAAAGCCCTAACTCGGGTAGCATCCACTTTTTTCTCTGTAACTGGGAACTCTGTCACCCTGAGAGGTTGAAGGAGACTGCTGACACAGCTAATCACCTTCCTCCCTTCCACAATATGACTGTACAATAAACTGTCTAGGGTCCAATTCCTTGTCTGTCATGCTTTCAAAGTGTGACAGAAAAGAATTCACTTCTCTTCACCTTCCATCTGGGGATCCCTGAGCTGCACTGTCATCCCCCCAGCCTGTGCTCCCTTGCCACCTCAGCTCCATGCCTCTCCAAGTAATTTTGGTTTCTCAGACATTTAGAAGCCACTAACATCCTGAAAACTCCTTTTGTGGCTGGCCAGTATTCTCTGGACTTCAGATCCCCTGTCCCATCCCTCCTCATATCCTCTCTCTCATTGAAGAGAAGAATGCAAACTTAACCCTAAGGACAGAACCAGCAGGCATCCTATTGATAGCATTAGCTCAGAGGTGAGCAACAGATACTTAATGCCTGGGTTTCCACATACATTTGAATAAATTGGGGCTTAAAAAAGATAGCAAGCCTCAATAGGTTCAGAACATCCATAGAGCAACTTTGGGAAGTCATTTCCTCTCTAGTCTTGTGCTTCCTCAAAAACTAAAGATGTTCATTTCAGAAACCCATTCTGACTGTGATAATATGCATGACTACGTATGGTCCAGAGGAGGAAATAAGGAGAGTAAATGCAGGGGCACTTGGAGCACTGCAGGCTTCCCCTTTCTTTGCACAGTGCCCAGACAGGAAGGCACTGGAGTGGGCGTGTCTGTGAAAGGATGAGGAAGTATTCTAGCCCAGCTGGTTATTTTTCCCCACACCCTGCCCTCATAGCAGGCAGGTGGATGACTCAACCAGAGAAAAGCTTGGCTTCCTGAAGCTGAGTTTCCCAGCTTGCCTTGCCCCATCTCCTCCAGTTCTCAGGAAAGATGGGATAATCCAGCAACCACCACTCTCCATGGAGTTTTCCATCCTGTCTTGGCCTGCAAACCTTGAGAAGACCCTTGGCCCTGAGCACAGTTCCCTACTCCAGCTCCCATTTAGCTCAGGAAAAGGAATACACAAAAATGGATACAGGCTAACATTTAAAAGTTATTCAAATATATGGAGAATCCCACTGTTTCCCTTTCCAGTGAAAATACAGCTGGGTGAGGCTCTAAGGCTCTAAGTCAGTCAGTCATTAAGCTGGAAGCATAGCCTTTCCTCTCAGCAGGCCTTGGTATTGCTAAGAAGGATAAACTGAAGCAGCCATAAAGAGCTTAGGTAACTAGATCTCCTAGGGGGGGTGGGGGGAATCTTGATTTTCAGATAAGATAGTGGTTGAGTCCTAAGCACTGAGCATTAGACTAACAAATAGCTTTGGTTTCCTCATTTCTAGACAGTAATAGCAGTCCTGTCCTACCCAGGGCCTCACCCCCAGCTTCCCAAAGTACTAAGTTTCTTTCTGTTTGGTTTGAGACAATGTCTCTCACTATAAATAAAGTCCTGGCTAGCCTGGCTGTGATCCTAGCTGGCCTTAAACTAAGATATTTGCTAGCCTTTGCCTACCAAATTATGCCTCCCAAATCACACCCAGCACCTATGCTTCAAATAACCTAACTGGAATGAAGGTCACTCATTCCAGTGCTACACAAAATAAGCTATCCCTCAATTCCACAAGGTATGCAATCAAGCCTTGAGCCTCTCTCACTGCCTGATGAGTTTAGATCAACCATACTGGAACTGACTGGGAGGCTCTCAGGCTTATATCACTCCCCTGTACTAAGGAAGAACTGAGAGGCAAACTAAGGTAGATGGTTTGAGGCAAGTCACAATGCAGGACCCAGGGCACCTTCTTCTATGTAGGCAGGCATCTACCAGCAGAAGTAGAACCTATTTACCTACCTTTCAGTCCTAGCTAGAACTGGCTGAGAATGTTTGTTATCTAGCAAGAATGCTTTTTCCTGAGTCAGGTGCTACAAAGGTCAGCCTTATACCAACCAGACTGAAGCCAACCTCTCTTCCAACATGTTAGCTCAACTGGGACGATACTTTGTTACTGAGAGGCAGTGGGACCCTGAGGAGTTTACTTTCCCACTCTAAGTTTCAATTTCTTCATAAGCACTGAGTAGGGAGAAAGGGGAAAGTGACTGATCTACCTGTGCCACAGCTTTCTGAACTCGCAGAAAACAGTTGAATGCACTTCTACACAAAACCAAGGAGCTGTTGCCTGCTCGAACAGGAGCTCCCTACTTTTCAGAACTGCTCTTCATCTGGCCTGCTGTAGAACAGACACTCGGGGTGGCACACATCACAGTTACTTCAGCCAATTGCACAGCCAGTTCCCCTTGCGTCATATGACTTTCACTGTTTAACATTCACAGTAAAGTCACAAGGTGGGGCTGGGAGCTTAGTAACAATAGCATGAAGTGTAAACTGTGGTGGTTGTCTAGAAGATTCCCTAAGAATTTCACCAACTGACTTTCACAGACATTTAGAGGTGAGAGGGCTCTTAGGTCACACTTGACTGTCAAGCTCCAGCCATTCAGGTTATTTCCAGACACCTTGCCTCACAGCTAAGGGTCACAACTGTTAGATTCATTTATTGTTTTTTCCAGTCAAGTCCTAGAATTCGTAGACAAATCATTACCCTCAAAGGGAAGGAGAGTAGCAATTGAAGGAGGGACTCCCTTCTTCTCTGTGACTCCAAGTCACTAAGGGACCATCACTTCATCTCATGTTGACATCACTCTGCACTCACTGGACTGGGTGAGATGAGCTGAGACAAAACTACATTTCAAGGGCCAACCTGAGACTGGGACTTTTTACAGCTGTTACTTCAGTTAGCCCACTGGAAGCATGAGCTCCTGGAAGGCAGGGATGCTGCTATTTGCTTAAGGCTGCTAAACTGTTGACATTCACACTGAAAGACATAGACGCTGCTGCTTCTGAATCAAAGCCTCTAGTCGCCAGGACTTGGAAGAATGATAGTACAGAAAATATGGGGCAAAGACGTCCCAGAGCATAGATTTAAGTTTTGGCTCTGCAGTGCTTAGCACCCTAGCCAAGTTACTGTACCTGTCTGGGCTTCCACCCCCTATGAGGCCAGAGAGCATTTGTATAAGTCAGTGATACATGTAAAAATACACTGTGAATATCCTGAGCTATTATCTAATGACAATAACCAGCCATTTTCTTGTCCTCCAAAAACATGTTTTTTGAGAAAAGAATGCCTGAAAAAGCATACCTTAAGATATTTAATAAGATTTAATCTTTTAGTATGACTGTCTTCTCCAGCCCCAGGATCCTGAAAGCACACAAAGTTAACTGATGTCTATTTCTGGTATTTAAATGAATCCTATGTCCTTGCTTGTCCTAAGAAATCTCTCTTGCCTTGCAG
Seq C2 exon
ATTACATGAAAGAATCTGTGTGCAGTTCTAGCACTTGCTCCTTGAACAGCAGTGAAAACCCTTACGCCACAATTAAGGACCCACCCATCCTCACCTGCAAGCTTCCAGAAAGCAGTTATGTAGAAATGAAGTCACCTGTGCACTTGGGGTCTCCGTACACAGATGTGCCATCCTTGTCGACATCTAATAAAAATATATATGAAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036466-Megf11:NM_001134399:23
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.232 A=NA C2=0.247
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: