RnoINT0091346 @ rn6
Intron Retention
Gene
ENSRNOG00000010634 | Megf11
Description
multiple EGF-like-domains 11 [Source:RGD Symbol;Acc:1582797]
Coordinates
chr8:70178246-70183986:+
Coord C1 exon
chr8:70178246-70178302
Coord A exon
chr8:70178303-70183762
Coord C2 exon
chr8:70183763-70183986
Length
5460 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
AAATCTCTCTTGCTTTGCAGATT
3' ss Score
10.02
Exon sequences
Seq C1 exon
GCACTTGTGGAATGGACAGACGTCAGAACACATACATTATGGACAAAGGCTTCAAAG
Seq A exon
GTAGAGTATCTAATCCTGATGTCCTGTTACACAGGGCTTAGCAAGGGATTATAGATCTGAGATGGCAAAGAATTCTGCCTGAGAGAAACTGCAAACCCCAAACCCCTTTAAAAAAACAAAAACAAAAACAAAAACAAAAAAAACGAAAAAGCTTAAAAAAAAAAAATCACCGGACCCAGAGCCGCTGGGCAGCTCTGCCTAGGAGGAACACTCTTAATAATATTGAATTCATCTTTCCACTGCAGTTGCACCTGCTTAGCAAACGCTTGTGGGTTTGTTATAGCTGTCAACTAAATGTCTTCAGAAATGTAGATCATCATTATCCAACCAATTAGTATGAGTCAAATTGATTATAAATCTGAAATAAAATCAATCTACCTGCCCCAGAGGCCTTCTGTCATTGTAATGGCAAGGAACACCACCCTGCACCTGCTGCCTTCCTGGGGCACAAGGAGTGCAAACGATACCCAGTGTTAACATTGTATGGCCTTCACCCTCAAGAGATCTCTACGCCCAAGAGCAGGGAAGCCAAGACAGATGTCTACACCACAGGAACTACTTACAAGGTGGACCATCCCTCTAGGAAGTCTACAGGTGAAGCCAAAAAAAACAAAAACAAAAACAAAAAAAAAAACAAAACAAAGATCAAGTCCAGTCCCTGGATAAGGTCCTAGGTTTAAATGCTGGGACATGTGAGCTAGGCAGAGAGCTTTGGAACTCTGTCACTTATTAACCCTGTGCTTCCTAAGGCTGTTTCTTCATCTGCAAGGTTGGGATAATTATGCCTGTTGACTCATGCCTGTCTTATTATCTAACAAGGTTATCTTGGGTGTCCAATAAAGTTGGATGGGAGTGCTTTTGTATATTATAAAATTGGTACCAATGTGATGTCTCTGGGAAATGTCTCAAAGTCTCAGTCAAATTGAAAGAGCAGTAATAAAAGTCAGCAAAGATCCCAACTGATATTCTAAATATAGCACTACACAGGAATCACCTGGCAAGTGTGTTCAAACTACAGAGCTTTACACCTACAGCAGATTCTGCAGCAGTAGATAGAGGGACCCTGTACTCTGCAATTGCAAGGAGTACCTCACGGTATCTTTATGCATTTTATAACCCAACTATCATTTGTCTAAACTTTCCCAGGTTTCTGTTCTGATCTTTCAGACCTAGCATGGCCATCTCCTAACCAAGGAGAACAACTTGTGCACAACTCATGGGGAAATGGCTATCAGAAGTGGGATGAGCAGGACCCAGGTGGCATTGTGTTCTACAAGCAAGAGAACATCCAGGTTGAGTGACCATCAGCTTGGTTTAGGATGTGCAAAACCCAGGAAACCTGTCTGATGAGGGAGGCCATTCCCAAACTCCAAGCCAGCCACAGGCAGTAATCACCTGGGGGCTTTATTATGACAAGTTTCTGAGGGTTCTGCCTTAAACCATCCAAATGGAGGCAAACACCATTTCGGTATGTGAGGTTGCCAACAGAAGAGCAATTATACCACTTAGTCACTGTGACCCAAAGTCTCAGTTTCTTTCTCAGTATGGAATGGGGACTAGAAAGCTCTTCCAGGGCCTTTGAGGCTTTGTGAAGAAGTATGACTCAATGGAGAATAGCTCAGACAGGCCCTGAGATTAGCATATAAGCACACCTCACCTATACACCCTGTCATCCTGTGCATGGTGTTTCAGGTAACTACTTTTAAACTCTAAACCATAAATGTAAAATAAAGCCAATGAAAGCCAGGCTCTGCCTTCATCATTGCATTCCTGTCTTATGGGATCATCTAAGTGCATGGGAGGCTCTAAGAGGCAAGCAGCCAGATTCGTCACTGCCTCTCATCAGCTTTCAAATTAGAGAGAACTGTGTAGGCAAATGAACCATCAAGTGTTGGGAGCCAACATGATACAGTAAGAGTTCAAAGAGAGGCAAGTGAAATATTAGTGTAGAACTTTACAGAAAAGCTTATAAAACACACGGAACAATCCTACCTGGGGGCTAAATCCCCAAACATCTAGTTCAGCTACTTCATGTCACCAATTTAAACTGTCTCCTAAAGCAACAAGGGCAAGGCCAAACCAGCAGGACTAATTAAAGAGTCTGGATGTTTTCCAAACTTGGGGGTGCGGTGGGCAGAGAATGAGATTGGGTTCTAGTCCAACTGTATGGTGCTCACTAGACACAGCAGTATCTGTGGGTCTTGGCTTCTTCCTCTTTAAAAAGCACAGTTGTAACAGCACCACCTCTAAGGCCCCTTACAACTCTGACATTTTAAAAGCCCTAATTCAGGTGGCATCCACTTTTTTTTTTCTGTAATGGGAACTCTGTCACCCTGGGAGGTTGAAGGAGACTGCTGACACAGCTAAGCACCTGTCCTCCATTTCTGCTTCAGCAATATGACTGTACAATAAACTGTCTCGTGTCCAATTCCTTGTCTGTCATGCTTTCAAAGTGTGACAGAAAAAAATTGACTTCACCTTCTGTCTGGGAATCCTTGAGCTGTACTGTCATGTCCCAACCTGTGTCCCTTGCCACCTAAGTTCCATGCCTCTCCAAGTAGAGAGCAACTTTGGGAAGTCATTTCCTCTCTAGACTTGTGCTTCCTCAAAACAATGAACATGTTCCTTTCAGAAACCCATTCTGACTGATAATATGCATGACTACAGATGGTTCAGAGGAGGTAACAAGGAGAGTAAATGCAGGGGCACTTGGAGGACTGCAGGCTTCCCCTTTCTTTGCACAGTGCCCTGACAGGAAGGCACTGGAGTGGGCGTGGCTATGAAAGGAAAGGACAAGGAAATACTCTAGCCCAGCTGGTTATTTTCCCCACACTCTGCCCTCATAGCAGGCAAGTGGATGACTCAACAAGAGAAACGCTTGGCTTCCTCAAGCTGACTTTTCCAGCTTGTCTTGCCCCATCTCCTCCAGTTCTCAGGAAAGATGGGATAATTCAGCACCCTTCACAACCACCACTCTCGATGGGTTTTTATGTCTTGGCCTGCAAACTTTGGGAAGACCCTTGTCCCTGAGCCTAGTACCCTCCCCCCAGCTTAGCTCAGGAAAAAGGAATAGACCAAAATGGATAAAAGCTAACATTCAAAAGTTATTCAAATATTGAGATCCCACTGGTTTCACTTTCCAGTGAAACTACAGCTGGGTGAGGTTCTAAGGCTTTCCCACTATTCAGTCATTAAATTCAAAGCTTAGCCTTTCCTCTCAGCAGGCCTTGGTATTGCTAAAAAAGGATAAACTGAAGCAGCTGTAAAGAGCTACATGGGTAACTAGATCTCCTGACGGGGAAAATCTTGATTGTCAGATAAGATAGTGGTTGAGTCCCAAGCACTAAGAATTAGACTAATAAACTGAACTCTGGTTTCCTCATTTCTAAACAGTAATAGCAATAGCAGTCCCATCCTGCTCAGCCTCCAACCCCCTTCAAAGGTACTAAGTTTCTTTCTGTTTGGTTTGAGACAAGGTCTAACCATAAATAAAAGCCCTAGTTAGCCTGGCTGCGAACCCAGCTGGCCTTAAACTAAGATATTTACTAGCCTTTGCCTCCCAAATCACGCTGAGCGCCTATGTTTCAAATAACCTAACTGGAATGAAGTTACTCATTCCAGTGCTACACAAAACAAGCTATCCCTCAATTCCACATAGTATACGATCAGGACAGTGGTGATAGATAATGAACAGCTTTCAAATAAGAAGCCCCGAGCCTCTCATTGCCGGATGAGTTTAGATTAACCACACTGGGCCTGACTGGGAGGTTCTCAAGCTTACATCACTCCCCTGACTAAGGAAGTACTGAGAGGCAAACTTAGATGGCTTGAAGCAAGTCACAATGCAGGACCCAGGACACCTTTTTCTACCAGCAGAAATAGAACCTACTTATTACCTTCCAGTCCTAGCTAGAACTGGCAGAGACTGCTTGTTATCTAGCAAGGATGATTTTTTTTTCCTGAGTCAGGTGCTACAAAGGTCAGCCTTATACCAACCAGACTGAAGCCAATCTCTCTTTCAACGTGTTAGCTGAACTGAGAGGCAGTGGGACCCTGAGGAGTTTACTTCCCCACTCTAAGTCTTAATAAGCACTGAGGTGGGAGGAAGGGGAAAAGTTACTGCTCTACCTGTGTCACAGCCTTCTGAACCTGAAGCAAACAGTTGAATGCACTTCTACACAAAACCAAGGAGCTGCTGCCAGTTAGAATAAGAGCTACCTGCTTTCAGAATAAATGCTCCTTACTGGACCTGCTGAAGAACAGACACTCAGGGTGGCACACGTCGCAGTTATTTCAGCCAATTGCATAGCCAGTTCCCCTTGAGTCACATGGCTTTCACTCTAACATTTTCAGTAAAATCATAAGGTGGGGCAGGGAGCTTAGATAACAGCAGCCTGAAGTGTAAGCTGTGGTGGTTGTCTAGAAGATTCCTTAAGAATTTCACCAACTGACTTTCACAGACATTTAGAGGTGAGAGGCCTCTTAGGTCACACCTGACCGTCAAGCTCCAGCCGTTCAGGGTTATTTCCAGACACCTTGCCTGTCAGTGCCCCACAGCTAAGGGTCACAACTGTCAGACTTATTTATTGTTTTTTCCAGGCAAGTCCTAGAATTCGTAGACAGATCCTCACCCTCAAAGGGAAGGAGAGCAGCAATTGAAGAGGGAGTCCCTTCTCTGTGACTCCAAGTCACTAAGGAACCTCTTTCCCCAGTAGAGCTTCTGTCACTTCATCTCATGTTGACATCACTCTGCACCCTTGAGCAACTGAGCTCTAATGACAGACAAGCATGACTCAAACATTCCCAAGACTGGGTGAGACAAGCCTACACCATACTTTGGGCTGAGACAAAGCTACATTTCAAAGGCCAACTTGAGACTGGGGGCTTTTTATAGCTGTTACACACTTCAGTCAGCGCACTAAAGCATGAGCTCCTGGAAGACAGGGATGTTGCTATTTGCTTAAGGCTGCTAAACTGTTGACATTCACACTAAAAGACAGATATGCTGCTGCTTCTGAATCAACACTTTTAGTCATACAACTCCAAAGAATTATATCACAGAAAATATGGGGCAAAGAAGTCCCAGAGCATAGATTTAAGTCTTGGCTCTGCAGTGCTATTAACCAGTTTATCACCCTAGCAAAGTTACTGTATCTGTCTGGGCAGAGAGCATTTGTATAAACTAAGTGATAACCTGTAAAAATACACTGTAAATATCTTGTGCTACTATCTAATGACCATAACCAGCCATTTTTTTGTTCTCCAAAAACATGTTTTTGTGAGAAAAGAATGCCTGATAAAGCATACCATAAGACAGTTAATAAGACTTAATCTTTTAGTATCATGGTCTTTTCCAGCCCCAGGATCCTGAAAGCACACAAAGTTGACTGATGTCTGTTTCTGGTATTTAAATGAATCCTATGTTCATGCTTGTCCTAAGAAATCTCTCTTGCTTTGCAG
Seq C2 exon
ATTACATGAAAGAATCTGTGTGCAGTTCTAGTACTTGCTCCTTGAACAGCAGTGAAAACCCTTATGCCACAATTAAGGATCCACCCATCCTCACCTGCAAGCTTCCAGAAAGCAGTTATGTAGAAATGAAGTCACCTGTGCACATGGGGTCTCCGTACACAGATGTGCCATCCTTGTCAACATCTAATAAAAATATATATGAAGTTGGTAGGTGTCTCACATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010634:ENSRNOT00000037941:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.297 A=NA C2=0.158
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]