GgaINT0027391 @ galGal3
Intron Retention
Description
NA
Coordinates
chr10:20328355-20333154:-
Coord C1 exon
chr10:20333098-20333154
Coord A exon
chr10:20328562-20333097
Coord C2 exon
chr10:20328355-20328561
Length
4536 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
ACTCCCATCTTGTTTTGCAGATT
3' ss Score
11.06
Exon sequences
Seq C1 exon
GTGCTTGTGGGATGGATAGACGTCAGAACACATACATAATGGAAAAAAGCTTCAAAG
Seq A exon
GTATGGTATCCAGTGCCTGCAGCCACCCTGGCAAAGAGTTTGAGAAGGGTGTCGTAGAAGAGGTGAGATAGGAGACCTGGGCGCCCGGGCGAGCAGCCGTGCAGAGGCAGAGAGGGACAGAGCAATTACCCACAACATGAGCCCACGTGGCTGTCTGGGATCTGCGTTATGGATGTGAGTCTTTGCCCAGATGGGGGCTCCTGCCTGGCAATGCAGCACAGGAAACGAGGCGGGTCTGTTGCGGGGACAGGATGTGCAGGTGGAGGGGAAGCTCTTCTAGGAGCCAGCAGCCATCCTACAGGGCTTTCTGGTGGCCGTTGCTGCTGACAGAATGGTGTGTTGGTCTGCTAGGTTGCAGCTCCATAAGGCTCTCAGCCATCTAGAAAAACGGCTGACCCTGCTACATGGCCTTTGCAGAGATTTATAGCAGAGCCTGAGAAAAGACCTCAGTGCATTAACCAGTCGCACTGGCACGAAGTAATTAATGGGCTCTGACTCTAGGGCTGTTCTAAAAAGGGATCATGCGTGAGTCATGTAGAAAGGCCCAGTGACTTTATATTTTGGTTGTCCTTCAGACTTGCATTCAAAATATTCAGCTGTGCATGAACTGCACTTGGCACAGTGTGGGCTGCAAGCACCTCAGCTCCTGCCCTGCGCCTCAGCTTGGGTCCTGGCCTGGCTGCCCGATTCCAGCACTGTCAGCTGGGCTCAGCCAGGCCCGGCTCACTGCTCCAAGGGGCTGAGCTGCCACAGGGCAAAGCCTGTATGTGCACTGACAGCAATGCTGCTGAATGCAGTGCTGGTACAGGCAGCAATGGATGCTGACAGCCCAGCCTGGGAGCGCTGAGCGCCTTGTGGCTGCTCTCTACAGAATAAGGCAATGTAATATTTGGTAGAACGGGGCCTTACAATACACTGAAGGCAACCAATGCTCCATGGCCAAGGCTTTCTTGACAAAGCTAAATTTAAAATATTAAGGGGGTTACGCGTGTATATCCAGCTCAGTCCTATTTCAGCTACTTCTGAAAAAAAGGAAAATCTTTACAGCATAGTTAGTTGTTCTTTTTACATGGGACTATTAATTTCAAGATTAAATTACTGTATTTAGAAGGTTAGAAAGCTGCTCTGAACAACAGTCAGGCTTCCCGCCCAGGGCACAGTGACACAGAGGGGATGTATCCATGTGACAGAGGAAAGGACAGCAGGAGCGAGCTGTGAAATGCAATTTCTACTGTGACATACTGTGTTTATTATCTGGGATCTGAGCTGCTTTCTTTCCATGTCTGTCTCCTTAATGAATTCAGAACTCGGGACCAGAAGCCATGTCAGAAAGGCCAATGGGCTCTTAGGGCAGCAGGGCAGGCCGGCACAGGGACCCCTTGGGGCAGTGAAGGGCTGGGAGCCCCCGTGCCCACCCTGTGCCTGGTGCCGTGGTGTGACAGCAGCTGAGCTGTCACTGCGTTTTGAGGGCAGTTTCTTCCCTGTGTGTGGTGCCCATTGCTACCATTTCCAGCTGTTCTTTACAGCTGAGTCCTTTTCAATCATTTATTTATTTATTTATCAGTGAATGCTGATGTGCTGGTGGGGTAATGTGACCTCAGGCACTGGCATTTTAAGGAGGTTCCCTTTGTGTGATTCCCAGTGAAACCCCAGCAGTTAGGATCACTGATGCATGGGAGGCTCAGGGCATCACTTAGTGCGGGTCGTTTGCTTGTTGTATGGGAATATAACTGTGTCATGCTCGCCTGAAGCAGAGCAGAGCTCTCTCGGCGTTGCTGTCCTTGCAGCAGTGAGGTTAGCCAGGGAAATGGAAGCAGCCATAAATGTGATTAAATAGCAGGAGAGCGTGTTTTACCTGTGTACATCATATGTCCTTAGCACTCTGAACATGAAAGTAGGTATAAGGCTTGTCGTTATTAAGCCAGAGGGTATTCAGAATAGAACAGAGTAAACCGGTCTGTGGGAGGGACACGTAGATCCTGGTGATGAAACTAAAATCTCCTTGAAAGGTGCGTGATGGGCATGCAGGTCCCAAAGATGGGACCTCTAAGCCAAAGGAACCCCTTCCCCCCGCAGCAGGCAGGGTGCTGAGCCAGGGATGGTGTGGGCACAGCAGAGCCCAGCACCCACGCACGGCCCCGGGGCAGCTGGACTGGGGATGGCTCAGTACTTTTGAGACGAGTTAAATTAATTCATGGAATGAAATCTGACAAGTGATGCCAGACTTTTTAATTATCCCCAAATTACCTCCATAACAAAGTAAGTCAGAGGCTGCCACATCCTTCAGTTAAATTCCTTGCAATCTTGCGCACCATGTCCTGTGGGCTAATGGCTCCCTGGTGTATAGCATGTTACCCAACGTGCTCTGGTGCTCTGTAAATTATATCATATCTGAGCAAAGGGCCTAATCCCTGGATAGACACAAAGCTCCCACTTACGTCAGCAGGCGTCGGTTCATGGCAGCACTGCCTATGGGAAAAGGCAGATCTTGGGACTGCCCAAGTGATTGCAGCGAGCCCCTGTGCTGTTCTGCTGGCCCCATCTGCATAGGATGTAGCAGTAGTGTCGGTACTGCGGGGTCACTTCTGGCTCAGGAAGATAACAGTAGCTGAGCTGGATGGAACCAGATCACGTATCTGGGCTGAGTCCTGGTGGTGCCTGCACCAACGCCTCGGCGAGCTCGTGGCTGCTCGCTGTGGGAAGTGTGTGGTTCTTCCATGCACAGCCTTCCCAGCGGGGACTGAAGACTGGGAACCAGTACATATAGTACAGGTATTTTTAGCCTAAAGATTTTCATTTCATTATAGAATTGGCTAGTCTTTGCTGTCTCCTCACTTTTGAACACTAGTGGGTCCTAGACTGCATGGCACCTTGATTTAAGTCATATACGTATCAAAAGCTAGTAACCCTGAGATCATTCAAGCACAAAAGCCTTTGGTCTTGCAGGGTTGCTTCACTGCTAAAAGGAGAGGACAGGCTTTCACCAAACTGCCTTTGCTGGGATCACATTGCTGGCCAAGCCCCGTGCCAGCAGCTGCGTGTTGCTGGGATGCACCAGGCTTGCTTCACTGTGAAGTGAAGGCATTGTTAGATCTCACCCAGGCTGACGTCAGACAAGCTTCTAAATTTTAATTACTCCATAAATACTGCACTGGTGCCAGGGCCTCTGCCAGCCTCCTGCTTCCCTGACCCTGAGAGCTGAGGAGCCCAGAGATTGGTTTGTATTGCTAAAGCTGGAGGAGAGAAACGCAGTAGCTCACTGCAGGGCACGACCTGAGCCCTTGCTTGGGGCACCTGCTCAGCGCCAGCCCCCGTGGGGACTGAGGGACACGCACAGACACAGCCCCAGGTCACACTGGTGATGCAAACTGGCAAGTGAGTTAGCAGGACGGGGAGGAGAAGCGCAGAGATGAGGTTTTTATAGGAGAAGCGATATCTTGTTGTCTGTCTATTTCTTAACCTGAATTTCTCTTTTTGTCTCCCATACTAGACAGCGGGGGCAACTGGGATTGCAGCTATTTTGCAAGTCCCGCTATTTCACCGGGAGTATTTCATATATACCAGGATCTGCCTTTGTACTGTAACCCAGCACAAGAAAATGCCTCATCTTTCATTGCATCGCTCTAATTCTAAATTAATGGCACTGCCCAGCAGGATGCACACAGCAGCAATGGCACGTTCTTAAATGTCAATGTTAAGATCTATTTATTCTGTTGTGTTTTTTTTTATTATTATTATGTAAAGCAAGACTGGCGCTGTACTTTGCAGCAGGCTGGCATACCCAGCCAGGGTCACCAACAGGGGACACCGGTGGTGCCACTGTGCGCCAGCCTTGCTCTCCCTGCTCCTCCATCCCCATCTCCTTCTTCCAGCCCAGGGAGAGGAGCAGTAGATTCCTACAGCACGGGGGAAGAGAAGTGAAAGTGAGGTTCAGAAGGAGGCTTGTCCCCCTGTGGAAAGCGAAGTGTTCCCTACTAGCAGGAGCCACCTCCTCCCAGTCTTAATGGCAGAAGGGAATACAAACAAACCAGATTCTCCTAGTGCTGGAAAGCCTCAGGAAAAGAACCCCCAGGGGGCACAGCACATATGCTGCATTGATGCAGTTCTATGCCTGCTGGAAATATCTCACTTTCAAACAGACAACACTTGATGTACCCAGAGCCCCCAGGACGCAGCTGCTGGCGGATCCGACCCACAGCCACATGCATGGGCTGCAGGTTACAGCAGAGCTCCTTAGGAACGGGAGAGGGAGGGAAAAGATTGCCACCAAAAATTAACAACTGCAGTAAATGACAACTAGAACCTTTCACAGCAAAACCTTTTGGTTTCAAGCAGGTTTTTATTTCTTTCCTGCTAAGAGAATTGCGGATGCAATGGTTTGGACACACCCAGAGCACAAGTGTCGGGTGTCTGTGCTGGATGCTTCGAGGATCTTCCTTTCCCCTGCCCCCTTCTGCCCATCCTGCCCCTCCTGCAGAGGTTGAGCTGCAGCCCACCTAAGGAAGCTAACAGTCCCACTCCCATCTTGTTTTGCAG
Seq C2 exon
ATTATATGAAGGAATCTGTGTGCAGCTCCAGCACTTGTTCTCTGAACAGCAGTGAAAACCCATACGCCACCATTAAAGATCCCCCCATCTTAACATGCAAACACTCCGAGAGCAGCTACGTGGAAATGAAATCGCCTGGTCACAGGGACTCCCCATATTCAGAAATGCCCACTTCATCAACAGCCAACAAAAACATCTATGAAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007631:ENSGALT00000012349:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.443
Domain overlap (PFAM):
C1:
PF153301=SIT=PD(20.9=70.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]