MmuINT0097644 @ mm10
Intron Retention
Gene
ENSMUSG00000036466 | Megf11
Description
multiple EGF-like-domains 11 [Source:MGI Symbol;Acc:MGI:1920951]
Coordinates
chr9:64700097-64700975:+
Coord C1 exon
chr9:64700097-64700153
Coord A exon
chr9:64700154-64700362
Coord C2 exon
chr9:64700363-64700975
Length
209 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
AATTCATCTTTCCATTGCAGTTG
3' ss Score
8.94
Exon sequences
Seq C1 exon
GCACTTGTGGAATGGACAGACGTCAGAACACATACATTATGGACAAAGGCTTCAAAG
Seq A exon
GTAGAGTATCTAATCCTGATGTCCTGTTACACAGGGCTTAGCAAGGGATTATAGACCTGAGGTGGCAAGGAATGCTACCTGAGAGAAACTGCAAAACCCAAGCCCCTTAAAAAAACAAAAGCTAAAAGGATCACAGGACCCAGAGCCACTGGGCAGCTCTGCCCAGGAGGAACGATCCTAATAATAACGAATTCATCTTTCCATTGCAG
Seq C2 exon
TTGCACCTGCTTAGCAAACGCTTGTGGGTTTGTTATAGATGCCAGCTAAATGTCTTCAGAAATGTAGATCATCATTATCCAACCAATTAGTATGAGTTAAACTGATTATAAATCTGAAATAAAATCAATCTGCCTGCCCCAGAGGCCTTCTGTCATTGTACTGACAAGGAAAACTACCCTGCACCTGCTGCCTTTCTGGGGCACAAGAAATGCAAATGATACCCAGTGTTAATACTGTATGGCCCTCACCCTCAAGAGATCTCTGCGCCCAAGAGCAGGGAAGCCAAGACAGATGTCTACGCCACAGGAACTACATACAAGGTGGACCATTCCTCTAGGAAGTCTACAGGTGAAGCCAAAAAGCAAGCACCAAGTCCAGCCCCTGGATTAGGCCCTAGGTTTAAATGCTGGGACACGTGAGCTAGGCAGGGAGCTCTGGAACTCTGTCACTTATTAACTCTGTGCTTCCTAAGGTTGTTTCTTCATCTGCAAGGTTGGGATAATTATGCCTGTTGACTCATGCCTGTCTTATTATCTAACAAGGTTATCTTGGGTGTCCAATAAAGTCGGATGGGAAGTGCTTTTGTATATTATAAAAGTGGTATCAATGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036466:ENSMUST00000093829:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.280 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAATGGACAGACGTCAG
R:
GAGGGTGAGGGCCATACAGTA
Band lengths:
305-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types