BtaINT0145001 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004177 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:37249448-37250089:-
Coord C1 exon
chr2:37249966-37250089
Coord A exon
chr2:37249624-37249965
Coord C2 exon
chr2:37249448-37249623
Length
342 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCG
5' ss Score
6.91
3' ss Seq
TGAATGGGCTTCTCTTTCAGGTG
3' ss Score
10.52
Exon sequences
Seq C1 exon
ATTGTTAGGTTGCTCTTGGACCACGGCTGTGATGTGAACCTAAGTGACAAGCAGGGCCGGACGCCCCTCATGGTGGCTGCTTGCGAAGGGCACCTGAGCACCGTGGAATTTCTCCTTTCAAAAG
Seq A exon
GTAGCGGCACTGTCCCCCTGTGAGGGCTTCTCTTGGGTGGACAAAGAAAAGAGCTTTGGCAGACCCATTTAGTACTTTCTGATTCAGTTTTTTTTTTTTAAATCTCTTTATTAAGTCTATTATTTATGGATGTTTTCTGCCTTGCACACAAGTAGAGGGTTTAGGGGTGCATCCCATGTACCCATTGCTCAGCCACAGCAGGGACGATCATTTCACCCATCAGCTACAGATTTCACCAGCCTGGTGGCCACATTCTGCAAGCCAGGCCCCTATGGATGCGGAAGGGTTTGCTCAGGTCTGGCCTTTCCGAAGTCACATTTATTGAATGGGCTTCTCTTTCAG
Seq C2 exon
GTGCCACCCTTTCTTCTCTGGACAAGGAGGGTCTGTCGGCATTAAGCTGGGCATGTCTGAAAGGTCACAGGGCTGTTGTCCAGTTCCTAGTGGAGGAGGGAGCCGAGATCGACCAGACGGACAAGAACGGCCGCAGCCCCCTGGACCTGGCCGCCTTCTACGGCGACGCGGAGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004177:ENSBTAT00000005473:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(44.1=100)
A:
NA
C2:
PF127962=Ank_2=PD(43.0=67.8),PF0002325=Ank=PU(48.5=27.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTAGGTTGCTCTTGGACCACG
R:
CTCCGCGTCGCCGTAGAA
Band lengths:
294-636
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]