MmuINT0156844 @ mm10
Intron Retention
Gene
ENSMUSG00000035168 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:MGI Symbol;Acc:MGI:1914110]
Coordinates
chr2:59834581-59835567:+
Coord C1 exon
chr2:59834581-59834704
Coord A exon
chr2:59834705-59835391
Coord C2 exon
chr2:59835392-59835567
Length
687 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
GGACTCTTCCCTTCCCTCAGGTG
3' ss Score
9.89
Exon sequences
Seq C1 exon
GTTGTCCGATTGCTTTTGGATCGCGGCTGCGACGTGAACCTGAGTGACAAGCAGGGTCGAACACCTCTCATGGTGGCTTCCTGTGAGGGACACCTGAGCACCGTGGAATTCCTCCTCTCAAAAG
Seq A exon
GTATGGCATGCTGCAGTGCGCTGGCTTCTCTTGCAGGAAGAACTTTGTACTTTTGGCTCCCCGGTTAGATGTTTTCTAAGGTATGATGCAGCCCAGGGGCTGATGGTCCAACTTTGGTGAGGACCCTCTGCCATCAGCTCTGCAGACCTGCTCAGGTTAACACGTGGGACCCTCAGCAGCCCAGGTTTATTCATGTTCTGTGAATGTGTTATTAGTCTTGGGGCAACGTACACCCCTCTTCAGTATGCCGTTTAAAAGAACCGAATTAAAAGTAGAAAGGCAAGGGAGATTTACTCAATGGGAAGAGGGACGAAGATCTGGAAGCTTCAAGTCCATCTTTGGAGTCCTGAAGTGAAATATATTTGACTCAAGGGCAAGGATAAGTGCATCTAAGCAGTACTGTTAAAGGTGTGGTCCCACCTGCCTTTGATCCATCAGAGTCTGGACTTCCATCTTGTCCTGTTAGGAGCTCCAACAAGTTGTTAAAACTCCGAAATCTCTTTTGGGAGACAAGTTCTCCCCCTGCCTGGTGCTTTTTGTTCTCTGGGCATGAGATTCTTGGATAAATTTCTATTCTTTAGGATCTACTGTTCAGCAGTCTGAGAGTAGATTGGGAGACCCAAGTGTCTCTTTAAGGCATCTTCATGTCTGCCAACCAGTTATAAATGGACTCTTCCCTTCCCTCAG
Seq C2 exon
GTGCTGCTCTTTCTTCCCTGGACAAAGAGGGCCTGTCAGCATTGAGCTGGGCTTGTCTGAAGGGTCACAGGGCAGTGGTCCAGTACCTGGTCGAAGAAGGAGCAGAGATAGACCAGACAGACAAAAACGGCCGTACTCCCTTGGACCTGGCCGCTTTCTATGGTGATGCAGAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035168:ENSMUST00000112568:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(44.1=100)
A:
NA
C2:
PF127962=Ank_2=PD(10.1=11.9),PF127962=Ank_2=PU(47.3=74.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTCCGATTGCTTTTGGATCG
R:
TGCATCACCATAGAAAGCGGC
Band lengths:
294-981
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types