DreINT0160142 @ danRer10
Intron Retention
Gene
ENSDARG00000077073 | tanc1a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1a [Source:ZFIN;Acc:ZDB-GENE-130530-819]
Coordinates
chr6:11815179-11818061:-
Coord C1 exon
chr6:11817938-11818061
Coord A exon
chr6:11815355-11817937
Coord C2 exon
chr6:11815179-11815354
Length
2583 bp
Sequences
Splice sites
5' ss Seq
AGGGTCAGT
5' ss Score
5.85
3' ss Seq
ATTCTGTGTTTGCATTGTAGGAG
3' ss Score
9.03
Exon sequences
Seq C1 exon
ATTGCAGAGTTGTTTCTTCAGCGCGGTGCAGATGTGAACTGCGGTGATAAACATGGTCGCTCTCTACTGATGGTGGCTGCAAGTGAGGGACACCTGGAGACTGTGGACTTCCTGCTCTCAAAGG
Seq A exon
GTCAGTGATTGGGGCATGGGAGTCCTTAGTTTACCCGCAACTCAATAAGATCATAAAAAAGACCTCAGTTATTAACATCAGAGTTTACACATGTTGTGGAAATTTCTCTTTCCTGCTTAAGAATTGTATATAAAAGTACTGGAATTAATAATAATAATAATTCCTTACATTTATGTTGTCAGTGGCGTAGCGGACAGGCCCGCATGATTAGGGGGCCCTGCGTCATCACGATTTTTAATAATTGTAAATCCGGCAACCGCAATAATCAAACTCTCGGGAACAACTGTGGTCGGAACCAAAGTTCACAGGTCTGTGTTCTCTGAACACCTCTCAAGCGGTGGACTACTTCATTCTGATTGCTTGCCACCGAACCGCATTATAGCTCATACCAAAAAGTTGACTTGATTTTACTATCCTCGCCGCCGGTTCTCACTGAAAATGAATGACTTCTGGCTACTTTGAGTTTGGGTTTGGTAAAAATATTGTTTCCCAAACTAAGCCTTAAGAAAAAAATCCTTAGGGCTCTATTTTGACGGTCCATTTTTTGGACGGTGCCGCTTTCAGGGCGTGTCAGGACGCTTTTTGCTAATTTAAGGACGGGAAATCTGCCTTGCGCTTCGACGCATGGTCTAAAAGGGTTGAGTTTATTTTCCTAATGAGTTATAGGTGTGTTTTAGGAATAAACCAATTAGAGTCTCATCTCCCATTCCCTTTAAGAGTCAGCTGCGTCGCGCCAAGAGCGCATTAACTATTTACAGAACGCAAAGTAAGTGTAAGTGGAAAAAATGAGCATTTCACAAGCAAACAGTTAACAGTTTTTTAACAGAAAACTGTTAAACAGAGCATCTACTGCGTGAGAATGAGAGATAATGGATCACTTTCACTTTCGCTCTTGGATAGGGAAACCTTTACGCACAGACATCAATTAGTCTATAAATAAATACTTTTGTTTGTTAAGCGCAAATATTTGTTTCAAAACTATTTCTAAATTCAGTTCTAATTTCCAGCAAATGAATAAATGAATAATAATAACAAAATGTGCTCAAAAACCTGAGTTATATCCTAAAACACATGCTGTGCCCCATATGGTCTAAAACCTGACAGGTGGGCAAATCTAAGCTTGTTTTTAATAAAACAAATATAAATATGGATATATTAAATAATACTGCTAATAATAATAACATTATACAAAAGCAAATTGTTATGAATGAACTGAAAAAACCTCCCGAGATGAAGAAGACATAAAAGCAGTGATTTTTCATATTTATGTAGGCTAGAAAATAATATGTTTTGTAATATTTTAATCCTTTATATTTATGTCCTATATCTATTCTTATTATATACTATATATATCCTTAATATTTATATTTTTTCATATGTAAAGATATTTGCCTATTGCTCTCTTGTGCGTATTAAGCAGTGTGTAAGCGAGGCGCAACTCTGCGTCGGAGTTTAGACCGGGTTAGTTTTGGTCTAATAAAAAATCTATTATAGTTTCTTAAAGTAGCAATGCGCCAGCGGTCCACCTCAGAACGGCTTCATTTTTAGACCAGAACGCCTATGGGCGCAAAAATGAGCGCTAATGCATTTGCTATTTAAACAGCGTAGCGCAACGCCTCAAAACGACTCTTGTGCCAAGCTGAAACTACTAAAAGACTACTGCGTCACGCCTTACATCACACTGCGCCGGGTGTATGATAGGGCCCTTAGTGTTTAGCTCTGTATAAGTCTGAAAGTTCATTCATAATGGTCTTAAAAAGGTTTTAAATTTGACTTTGAAACCTGCAGAAACCCAGTTGATCAGACTTTTTGATCTTATTAGCCACTGCACCAAATGTTCTGCCTTTGTTTGTGTCTCTGAATAAAATGAAGGCGTTTTTCTTAGCTAGACTGTGACCTCTGACGCATTTGTTTTTGGACCATTCTCTATAAACACTAAAGATGATTGTGCATGAAAATCCCAGTTCATTAGTAGTTTCTGAAATACTCAGACCATCCTGTCTAGCTCTAACAAATATAACAAACTCACTTAAAAGGGTAGTTCAACCAACTCTGGAGGGCCCTCAGTTTTTTTTTAACTATTATAAATGTTAATGTTCTACTCAACACAAAGGAAGATATTCGGAAGAAAGTCAATACCAAACAGTTCTCACCACTCATTTACTCCTATAGTAATTATTTTTCTAGCTATGGCTGAGATCTCTTTGGTTACTGACATTCTTACAAATATCCTCCTTTGTGTTCAGCAGAACAATGCAATTGAAATAGGTTGGGTATAAATTGAAGGTGAATAAATGATGACAAATGTCATTTTTGGGTGAACTATTTCTTTGAATTCCTTTTAAAGCAAATCAACACGCTTTACTGCTCAAGTTGCTGACATGATTGGCTTATTAGATATTTGCATTAAACGGTTGAAGATGTGCGTCTAATAAAGTGGCTGATGAGTGTACAGTATATGAGCCATAAAAGCTTTCTGTATTTAGAGTGACATTTCAGATGTTCGACTTTACAGGCTTTAATATTACAACTGCAGCAAAATTCCTGCGACAAATCTGGCATCATTCTGTGTTTGCATTGTAG
Seq C2 exon
GAGCGTGTTTGACAGCAGTGGATAAAGAGGGTCTGACCCCGCTTGGGTGGGCATGTCTGAAGGGACAAAAGAAAGTGGTGGAGTTTCTGGTGGACAGAGGCGCTCAGATTGACCACACGGATAAGCACGGACGCACTCCGCTGGACCTGGCTGCTTTCTACGGAGACGCGGACATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077073:ENSDART00000155090:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(44.1=100)
A:
NA
C2:
PF127962=Ank_2=PD(43.0=67.8),PF0002325=Ank=PU(48.5=27.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]