HsaINT0163613 @ hg19
Intron Retention
Gene
ENSG00000115183 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:29364]
Coordinates
chr2:160075749-160076378:+
Coord C1 exon
chr2:160075749-160075872
Coord A exon
chr2:160075873-160076202
Coord C2 exon
chr2:160076203-160076378
Length
330 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCA
5' ss Score
6.28
3' ss Seq
TGAATGGGCTTTCCTTTCAGGTG
3' ss Score
10.64
Exon sequences
Seq C1 exon
ATTGTTAGACTGCTGTTGGAACGCGGCTGTGATGTGAACCTAAGTGACAAGCAAGGCCGGACGCCCCTCATGGTGGCTGCTTGTGAAGGGCACTTGAGCACCGTGGAATTCCTCCTTTCAAAAG
Seq A exon
GTAGCAGCGTGATGCCCTCAAAGGTTTCTTTTGGACGGACACAGAGAGAACTTCAGCAGACCCATTCAGTGCTTTCTGATTCAAATTCTAAGTTTTCTGTTAATGGAAATTTTCTAATAAACAGTAGAGAGAATAGGCAACACAGCCACATGCCTGGTATTCCTCTTCAGCAGCGATGACCATTCTGCCAGCCCATCCGGCCAGTGTCACCCTTCACAGTGCTTGACTGACACTTGGTTCAGGCCGGGTGTTCCGCAGGTGTGAAACAATTTGCTTTCTGGCTTTGTCATCTCATAATGTTCATGTTCTGTGAATGGGCTTTCCTTTCAG
Seq C2 exon
GTGCAGCCCTTTCTTCTCTAGACAAAGAGGGTCTGTCAGCATTAAGCTGGGCTTGTCTGAAAGGTCACAGGGCAGTGGTCCAGTATCTGGTTGAAGAAGGAGCTGCAATAGACCAGACAGACAAGAATGGCCGCACACCCTTGGACCTGGCTGCCTTCTATGGCGATGCCGAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115183-TANC1:NM_033394:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(44.1=100)
A:
NA
C2:
PF127962=Ank_2=PD(10.0=11.9),PF127962=Ank_2=PU(47.3=74.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTTAGACTGCTGTTGGAACG
R:
CATAGAAGGCAGCCAGGTCCA
Band lengths:
286-616
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)