HsaINT0163613 @ hg38
Intron Retention
Gene
ENSG00000115183 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:159219238-159219867:+
Coord C1 exon
chr2:159219238-159219361
Coord A exon
chr2:159219362-159219691
Coord C2 exon
chr2:159219692-159219867
Length
330 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCA
5' ss Score
6.28
3' ss Seq
TGAATGGGCTTTCCTTTCAGGTG
3' ss Score
10.64
Exon sequences
Seq C1 exon
ATTGTTAGACTGCTGTTGGAACGCGGCTGTGATGTGAACCTAAGTGACAAGCAAGGCCGGACGCCCCTCATGGTGGCTGCTTGTGAAGGGCACTTGAGCACCGTGGAATTCCTCCTTTCAAAAG
Seq A exon
GTAGCAGCGTGATGCCCTCAAAGGTTTCTTTTGGACGGACACAGAGAGAACTTCAGCAGACCCATTCAGTGCTTTCTGATTCAAATTCTAAGTTTTCTGTTAATGGAAATTTTCTAATAAACAGTAGAGAGAATAGGCAACACAGCCACATGCCTGGTATTCCTCTTCAGCAGCGATGACCATTCTGCCAGCCCATCCGGCCAGTGTCACCCTTCACAGTGCTTGACTGACACTTGGTTCAGGCCGGGTGTTCCGCAGGTGTGAAACAATTTGCTTTCTGGCTTTGTCATCTCATAATGTTCATGTTCTGTGAATGGGCTTTCCTTTCAG
Seq C2 exon
GTGCAGCCCTTTCTTCTCTAGACAAAGAGGGTCTGTCAGCATTAAGCTGGGCTTGTCTGAAAGGTCACAGGGCAGTGGTCCAGTATCTGGTTGAAGAAGGAGCTGCAATAGACCAGACAGACAAGAATGGCCGCACACCCTTGGACCTGGCTGCCTTCTATGGCGATGCCGAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115183:ENST00000263635:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(44.1=100)
A:
NA
C2:
PF127962=Ank_2=PD(43.0=67.8),PF0002325=Ank=PU(48.5=27.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTTAGACTGCTGTTGGAACG
R:
CATAGAAGGCAGCCAGGTCCA
Band lengths:
286-616
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains