GgaINT0046918 @ galGal4
Intron Retention
Gene
ENSGALG00000012570 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr7:36021373-36021793:+
Coord C1 exon
chr7:36021373-36021496
Coord A exon
chr7:36021497-36021617
Coord C2 exon
chr7:36021618-36021793
Length
121 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
3' ss Seq
AGCTGATTTTCATTTTATAGGTG
3' ss Score
8.63
Exon sequences
Seq C1 exon
ATTGCTAAACTTCTTCTGGAGCATGGGTCTGATGTGAATTTAAGCGACAAGCAAGGCAGAACTCCACTCATGGTGGCTGCTTGTGAAGGACATTTGAGCACTGTGGAATTTCTCCTTTCTGCAG
Seq A exon
GTAGAAAATAAAGACTGTTTCAGTGCTGCACAGCTGTACCAGAGGCTGCATTCATGTAAGTTAGGTTATTTTGCATTTTAAAAAGGACATCTCCATTACAAAGCTGATTTTCATTTTATAG
Seq C2 exon
GTGCAACTATTTCATCTCTGGACAAAGAAGGGCTGACAGCTTTGGGCTGGGCATGTCTAAAAGGCCACAGAGAAGTGGTTCAGTATTTAGTTGAGAAAGGCGCAACAGTTGATCAGACAGACAAAAATGGACGAACACCTCTAGACCTGGCAGCTTTTTATGGAGATGCTGATATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012570:ENSGALT00000020527:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(44.1=100)
A:
NA
C2:
PF127962=Ank_2=PD(43.0=67.8),PF0002325=Ank=PU(48.5=27.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGAGCATGGGTCTGATGT
R:
AGGTCTAGAGGTGTTCGTCCA
Band lengths:
258-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]