RnoINT0147521 @ rn6
Intron Retention
Gene
ENSRNOG00000025394 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:RGD Symbol;Acc:1302949]
Coordinates
chr3:45906545-45907497:+
Coord C1 exon
chr3:45906545-45906668
Coord A exon
chr3:45906669-45907321
Coord C2 exon
chr3:45907322-45907497
Length
653 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
3' ss Seq
AAGTGGACTCTTCTCTTCAGGTG
3' ss Score
6.97
Exon sequences
Seq C1 exon
GTCGTGCAATTGCTTTTGGATCGGGGCTGTGACGTGAACCTGAATGACAAGCAGGGTCGGACACCTCTCATGGTGGCTGCCTGTGAAGGACACCTGAGCACCGTGGAATTTCTCCTCTCCAAAG
Seq A exon
GTGTGGCGTGTTGCAGTGCACGGGCTTCTTTTGCGGGAAGGACTTGGTACTTTTGGCTTTAGAAAAAAGTTTGAGAAAACTTTAGACGTCTTCTAAGGTGTGGTGCAGCCTGGGTACTTATGGTCCAGCTTAGCGTGTGGGACCCTCAGCAGCCCAGGTTTACTCATGTTCTGTGAATGTGTTACTAGTCTTCAGGCAACCCATGCCCTCTTCAATAAGGCATTTAAAAGAACCAAATTAAAAGTAGAAAGCAGACAAGGGAGATTTACTCAATGGGAAGACGGACAAAGATCCAGCAGCCCAGGTCCATCTTTGGAGTCCTGAAGTGAACTACACATTTAACTCAAGGGCCAAGGGTATATACATCTAAGCAGTCCTGGTCAAGGTGCGGTCCCTGACCCATCATTGTCTGGACTTCCATCTTGTCCTGTTAGGTGTTCAACAAGTTATTAAAACTCCAAAATCTCTTTTTGAGAGACAAGTTCTCCCTCTGCCTGCTGCAGTTCCTTCTCTCAACATGAGATTCTTGGGGAAATTCCCATTCTTTGAGATCCATTGTTCAACACAGTCCAAGAGTAAATTGAGAGACCCAAGTCTCTCTTTAGGACATCTTCATTTCTGCCAACCAGTTATAAGTGGACTCTTCTCTTCAG
Seq C2 exon
GTGCTGCTCTTTCTTCCCTGGACAAAGAGGGCCTGTCGGCATTGAGCTGGGCTTGTCTGAAGGGTCACAGGGCAGTGGTCCAGTATCTGGTCGAAGAAGGAGCAGAAATAGACCAAACAGACAAAAATGGCCGTACTCCCTTGGACCTGGCCGCCTTCTATGGTGATGCAGAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025394:ENSRNOT00000038983:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(44.1=100)
A:
NA
C2:
PF127962=Ank_2=PD(43.0=67.8),PF0002325=Ank=PU(48.5=27.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGCAATTGCTTTTGGATCG
R:
CTGCATCACCATAGAAGGCGG
Band lengths:
294-947
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]