BtaINT0154297 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010477 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr22:12483122-12484065:+
Coord C1 exon
chr22:12483122-12483232
Coord A exon
chr22:12483233-12483898
Coord C2 exon
chr22:12483899-12484065
Length
666 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
CCCCTCTCACGAATTCCCAGACC
3' ss Score
6.35
Exon sequences
Seq C1 exon
AGCACATCCAGGATGCCATCAGCAGCCTGGAGAGCATCCGGAATCACCCAGATGTGTCCCTGTGCTCCATCATGGCCCTCATTTATGCTCACAAGTGCTGTGAAACCATTG
Seq A exon
GTGAGTGCAGGCATGCTCAGCCAAGCCTGGCCCAGTGGGGAAAAGAGAGCCCTGCTCCAGACACTGCCCCCTCTTGGGCGGCTGCGGGAAGTGTATGCACACGTGGCCGCAGATGCTATGAGGAGTGGCTGCCAGTCCTGTCCCCACAGAGACCTCAGAGAAAACCCCATGCCCAGGCCCAGTTGAGTGGGAGCCACAGGCAGAACGCCTGATAGTGGGAGGGGTCCTCCTTTCAGATCCCGAGAACTGGGGAGATACCCTGCTTGCCTTTGCCAAGATCTTGTCAAGAAAAACCAAGCCAAAATAAAAAATTTCTACCCCTAAATCTCCACCTCTCTAGGCTCAGGGAGAGATTCCACAAAACTACGTACAAACTATTTCCCCATCTGGAATGGACTGTGGGCCTGAGGTGGGAGATTTTGGTTTGATCTGTCTGCCCAGAAAACTCCTGGGAACAGAGGAGAAAAGATACATCTCAACCAGCAAACCCAGGTCCAGGGCTGGGCTGCTCCTGTGGCATCACAGGGCCCGGCGTTGCTGGTTCCCAGGCCCTGGCTGTCGTGTGGTCAGCTGCATGTGTTGTGGGAGGCTCAGAGTGTCCAGGGAAAGGATCAGACAGACCTCCCCATCCTAACTTGTCCTCTTCCCCCTCTCACGAATTCCCAG
Seq C2 exon
ACCGAGAAGCAATTCAGGAGCTTGAGAGCAGCCTGAAGGAAGTCCGCAAGACAGCCAGTGGGACTGCCCTGTACTATGCTGGCCTCTTCCTCTGGCTTATGGGCCGCCACGACAAGGCCAAGGAGTACATTGACCGCACGTTGAAGATCTCCAGCAGCTCCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010477:ENSBTAT00000048382:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134241=TPR_12=PU(89.8=94.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACATCCAGGATGCCATCA
R:
CTCTCTGGAGCTGCTGGAGAT
Band lengths:
278-944
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]