DreINT0021847 @ danRer10
Intron Retention
Gene
ENSDARG00000102541 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr24:41156146-41158521:-
Coord C1 exon
chr24:41158411-41158521
Coord A exon
chr24:41156313-41158410
Coord C2 exon
chr24:41156146-41156312
Length
2098 bp
Sequences
Splice sites
5' ss Seq
TCGGTACGT
5' ss Score
10.06
3' ss Seq
TTGTTTTTTGTCCACATGAGATG
3' ss Score
-3.54
Exon sequences
Seq C1 exon
GTCACTCACAGGAGGCTCTACAAGAGCTCATCCTGCTGAAGGATCATCCTCATCTGTCTCTGTGTTCAACAGTAGCTCTCATTTACGCACACAAACACTGTGAGACTGTCG
Seq A exon
GTACGTCTGAGTTTATTAAAATGTCTCGTGGATGTTTAGGATGCATTGAGAATCTGGAAAACAGCTGAAATATACAGTAGATTTCATAAACACGTAAAAATATTAATAAATCAAATTAAATAAAGGACAGATAAATTCTGAAGTACGGAACCGGTTATTTGACTGATATTTTTGTAATGTATACCAGGAACCTGAGGAGGACATTAAAAAACTCTGGATATAAAAAGAGGTCACTATTCCAAAACGAAGATTCAAACAGAAACAATAAAGTGTCTTTCCTCTGTCGGGGGTTTTCCCTACTAAAAGTAACTATTAATGTTACTACAGACGTTAACACAGACGCAATGCAAGACTTGTAGAACGATTCCATCAATGTCTTCTCTATATTGACATTTACATTTAGTCATTTAGCAGACGCTTTTATCCAAAGCGACTTACAAATGAGGATAAGGAAGCAATTTACACAACTTTAAGAGCAACAATGAATAAGTGCTGTAGACGAGTTTCAGGTATGTAAAGTGTAAGAAGCAAAACATTGGTAATTATTATTATTATTTTTTTTATTTTTTATTTTTTTGCAGATTAGGAAGTGAAGTGGAGACTAAATACTTGAGTTTTTAGTCGTTTCTTGAAGACAGCGAGTGACTCTGCCGTTCTGATGCAGTTAGGGAGTTCATTCCACCAACTGGGCAGATTGAATGTGAGAGTTCGGGAAAGTGATTTCTTCCCTCTTTGGGATGGAGCCACGAGGCGACGTTCATTCACAGAACGCAAGTTTCTGGAGGACACATACATCTGCAGAAGTGAGAGCAGATAAGAAGGAGCAAAGCCAGAAGTCGCTTTGTAAGCAAACATCAGAGCTTTGAATTTGATGCGAGCAGCAACTGGCAGCCAGTGCAAACGGATGAGCAGCGGAGTGACATGTGCTCGTTTAGGTTCATTAAAGACCACTCGTGCTGCTGCGTTCTGGAGCAGCTGAAGAGGTTTGATAGAGTTAGCTGGAAGCCCGGCTAGTAGAGAGTTGCAATAATCCAGTCTGGAGAGAACAAGAGCTTGAACAAGGAGTTGAGCTGCATGTTCAGATAGGAAGGGTCGGATCTTTCTGATGTTATAGAGTGCAAATCTGCACGATCAAGCAGTTCTAGAGATGTGGTCAGAGAAGTTTAGTTGGTCATCAATCGTTACTCCAAGGCTTTTCACCATTTTGGATGCAGTAATGGTTGCCCCATCCATCTAGATTGAAAAGTTATGATGTAGAGTCGGGTTGGCAGAAACTTCAAGCATTTCTGTTTTCGCGAGGTTAAGCTGAAGATGATGATCTCTCATCCAGTGTGAAATGTCCAACAGGCAGGCTGAGATGCAAGCCGGAACTGAGGGATCATCAGGGTGAAAAGAGAGGTATAGCTGGGTATCATCAGCATAGCAATGGTAGGAGAATCCATGCTTCTTGATGACTGATCCTAGAGATGTCGTGTAGATGGAGAAGAGAAGATAAAGATGTGTGTCTTATATTAAAGATAAAGATGTGTATCTTCTGCTTTGTACACTGCAAAAATATCAGTTAATGAACAGTTTCTGTATTTAGTGTGTGTTGTGTTTTTGTGGTTGTGAATTGCATTATGGGATGTTGAACTCTGCTCTGTTGACTTCTGATGTTGAAAATTCAACTCTAATGCTTAACAAAGTGACATTTCAGTAATTTGAGATAGTATAATGTATAAGAAATAATAAAGAAATAAAGTGTGTAAAATAACAGTAAATGTGCTGCAGTTTATAACAAGATTTCCCTGTAATATACAACACCAACCCAGACAATACAGCACTGCACACTATTACACATAGGTAGAAAAGTCACTTTTTAAAAAAACTTTAAGGTCAAAAGTTGCTGGACGAAAGGTCAACATCCCATAATGCAACTTAAAAGCAGAAATAAACAGAGAAAAATAAAAACATGAATCACAAAATGCAGAAAAGTGCTAATTTATGGATATTTCTTTTAATGTACACACACTGCTCTGAGTGGCTGATGAATGAAATGAGTGAGGGATTCAGGGATCTTCTGCTTTTGTTTGTTTGTTTTGTTTTTTGTCCACATGAG
Seq C2 exon
ATGAAGATGCTGTGAATGAGCTGAACTCTGAGCTGAAGCGCTCTGGATCTACAGCCGGTGAAAGAGCGCTTTATTACGCAGCTCTGATCTACTGGATCCTCCAGATGAACCTCAAAGCTAAAACATGCATTAAAAAGATGCTGAAAATCTCGGAGACGTCACCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102541:ENSDART00000159738:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.036
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]