RnoINT0157560 @ rn6
Intron Retention
Gene
ENSRNOG00000034089 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:RGD Symbol;Acc:1308806]
Coordinates
chr8:128625535-128626556:+
Coord C1 exon
chr8:128625535-128625645
Coord A exon
chr8:128625646-128626389
Coord C2 exon
chr8:128626390-128626556
Length
744 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
CCTCCCCCTATTGGATTTAGACG
3' ss Score
5.06
Exon sequences
Seq C1 exon
ACCGTATCCATGATGCCATCAGTGAGCTGGAGAGCCTCCAAAGCCACCCAGACACGTCCCTGTGCGCGGTCATCGCTCTGCTTTATGCTCACAAATGCTGTGACACCATTG
Seq A exon
GTGAGTGGAGCTATGTTTGGTAGACTCTCTCGATGGGAGAAAAAGCCACTGCAGAGACACATGCTTGGAGAAGGCACCGTGCACAGGCAACTTAGATCTGCTGTCAGCCAGTCAAGACAGGCTATCCCTCGCTCTCACCCCAAGGGCCTCAGAGAACTCCTAATGTCTGAAACCAACTAAGGGGGAGCAGACAGAAGGCATGACAAAAGGGGTCATCCCCCCAGACTAGGAGCCTTGAAGACATCTTCATTCCTCACCAAGATGTTTTTTTAAAGGTTTATTTATTTTATTTATATGAGTACACTGTCGCTTGTTTTCAGAAGAGGAAAGACATCAGATCCCATTACAGATGGTTCTGAGCCACCATGTGGTTGCTGGGAATTAAACTCAGGGCCTCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCTCCGGCCCCCAAGATATTTTTTTAAAATTGTGCCCCCAATCTGAGGTCTCTAGGGAGTCAGAGAGAGGTGCTAGTGGAGACTCCCCATCCCTCACTCAGGATGGACTGTGGGCCTCAGTCAGGAATTCAGGGTTAGTCCATCCGCTCGACACCCTGGCAGACATGGGGTGGGGCCCCCCTGCTCCCAGGTGTACACAGCTCCCACGGAGGTGGGCGGTTGCCCTGGTGCAGAGAGGGCACGAGGCATCAGAAGGGAACATGCTGTGGTCCTCACTCAGTGGCCTCCTCCCCCTATTGGATTTAG
Seq C2 exon
ACGCAGAAGCAATTCAGGAGCTGGACAGCAGCTTGAAGGAAATTCGCAGGACGGCCAGTGGCATGGCACTGTACTACGCCAGCCTCTTCCTCTGGTTCATGGGTCACCACGACAAGGCCAGGGAGTACGTCGACCACATGTTAAAGGTCTCCAGTGGCTCCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034089:ENSRNOT00000043831:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGTATCCATGATGCCATCA
R:
CTCTTTGGAGCCACTGGAGAC
Band lengths:
278-1022
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]