HsaINT0174166 @ hg19
Intron Retention
Gene
ENSG00000168026 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:30761]
Coordinates
chr3:39151520-39152508:+
Coord C1 exon
chr3:39151520-39151630
Coord A exon
chr3:39151631-39152341
Coord C2 exon
chr3:39152342-39152508
Length
711 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
CTTCGCTCTTGGATTTACAGACC
3' ss Score
8.19
Exon sequences
Seq C1 exon
AGCACATCCAGGATGCCATCAGTGACCTGGAAAGCATCAGGCATCACCCAGACGTGTCCCTGTGCTCCACCATGGCCCTCATTTATGCTCACAAAAGATGTGAAATCATTG
Seq A exon
GTGAGTGCCACCATGCTCAACCAGGCCTGACCCACCAGGGGAAGGAAAGCCCTGCCCCAGAGATAACACAGCCCCTCAAGGGCTGCCAAAGGAGGTATGTGCCCTGGTGGCTGTGCAGATGCTGTTAACCAGTGAGAAGTGGCTGCTGCTCCTCTCCCCCTGGAGGCCTGGGAGAAGACTCCATGCCTGGGCCCAACTGAGTGGAAGCAGGCAGAGCCCATGACAGTGGGAGGGGCCCATGCTCCAGATCCCAAGAGTTGGGGAAACACCCTTCTTCTTTGCCAAGATCTTGTCAGAAAAACCAAGCCAATATATATAATTCTACCCCTAATCTCCACATTTCTAGAGTCAGGGAGAGGGTCCAAGAGAGACTACAGACTACTATTTCCCTACTCACAATAAGTTGTGGGCCTGAGGCTAAGGATTTTGGTTTGGCCTGCCTGCTCAGCACACTGCTGGGCACAGAGAAGAGAAGGTAATCTCAGACAGCACACGTGAGTCCACACCAGGGCAGCCCCTGCAGCATCTCAAGGGCAGGTACTGCTGGTTTCCAGGCCTTGGGCTGCATGCGGTGTGCTGCATATGTTGAAGGAGATCCACAGTGTCTGGGGGAGACCCCGAGGTAGTTCCCTGGGCCCTCGGTGGCCCATGCAGAACCAGGCAGACTTCCACATCCTAACTCTCCCTCTTCCTTCGCTCTTGGATTTACAG
Seq C2 exon
ACCGAGAAGCAATTCAGGAGCTTGAGTACAGCCTGAAGGAAATACGCAAGACAGTCAGTGGGACTGCACTGTACTATGCTGGCCTTTTCCTCTGGCTCATAGGCCGCCATGACAAGGCCAAAGAGTACATTGACCGCATGCTGAAGATTTCTAGAGGCTTCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168026-TTC21A:NM_145755:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.012
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134241=TPR_12=PU(55.1=67.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACATCCAGGATGCCATCA
R:
CTCTCTGAAGCCTCTAGAAATCTTCA
Band lengths:
278-989
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)