HsaINT0174166 @ hg38
Intron Retention
Gene
ENSG00000168026 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr3:39110029-39111017:+
Coord C1 exon
chr3:39110029-39110139
Coord A exon
chr3:39110140-39110850
Coord C2 exon
chr3:39110851-39111017
Length
711 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
CTTCGCTCTTGGATTTACAGACC
3' ss Score
8.19
Exon sequences
Seq C1 exon
AGCACATCCAGGATGCCATCAGTGACCTGGAAAGCATCAGGCATCACCCAGACGTGTCCCTGTGCTCCACCATGGCCCTCATTTATGCTCACAAAAGATGTGAAATCATTG
Seq A exon
GTGAGTGCCACCATGCTCAACCAGGCCTGACCCACCAGGGGAAGGAAAGCCCTGCCCCAGAGATAACACAGCCCCTCAAGGGCTGCCAAAGGAGGTATGTGCCCTGGTGGCTGTGCAGATGCTGTTAACCAGTGAGAAGTGGCTGCTGCTCCTCTCCCCCTGGAGGCCTGGGAGAAGACTCCATGCCTGGGCCCAACTGAGTGGAAGCAGGCAGAGCCCATGACAGTGGGAGGGGCCCATGCTCCAGATCCCAAGAGTTGGGGAAACACCCTTCTTCTTTGCCAAGATCTTGTCAGAAAAACCAAGCCAATATATATAATTCTACCCCTAATCTCCACATTTCTAGAGTCAGGGAGAGGGTCCAAGAGAGACTACAGACTACTATTTCCCTACTCACAATAAGTTGTGGGCCTGAGGCTAAGGATTTTGGTTTGGCCTGCCTGCTCAGCACACTGCTGGGCACAGAGAAGAGAAGGTAATCTCAGACAGCACACGTGAGTCCACACCAGGGCAGCCCCTGCAGCATCTCAAGGGCAGGTACTGCTGGTTTCCAGGCCTTGGGCTGCATGCGGTGTGCTGCATATGTTGAAGGAGATCCACAGTGTCTGGGGGAGACCCCGAGGTAGTTCCCTGGGCCCTCGGTGGCCCATGCAGAACCAGGCAGACTTCCACATCCTAACTCTCCCTCTTCCTTCGCTCTTGGATTTACAG
Seq C2 exon
ACCGAGAAGCAATTCAGGAGCTTGAGTACAGCCTGAAGGAAATACGCAAGACAGTCAGTGGGACTGCACTGTACTATGCTGGCCTTTTCCTCTGGCTCATAGGCCGCCATGACAAGGCCAAAGAGTACATTGACCGCATGCTGAAGATTTCTAGAGGCTTCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168026:ENST00000431162:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.007
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134241=TPR_12=PU(76.0=67.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACATCCAGGATGCCATCA
R:
CTCTCTGAAGCCTCTAGAAATCTTCA
Band lengths:
278-989
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains