BtaINT0156633 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020296 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr2:26501463-26503014:-
Coord C1 exon
chr2:26502884-26503014
Coord A exon
chr2:26501692-26502883
Coord C2 exon
chr2:26501463-26501691
Length
1192 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
CTGTTTAAAACATTTTACAGGTT
3' ss Score
7.79
Exon sequences
Seq C1 exon
ATCAATCCATAATGGATGTTTTGAAACATAAAAGTTTCTTAGAAGAGCTATTGTTTTGGACAATAAAGTATGAATTTCCGCAGAAGATGGTGACTTTCTTACTCAACATGCTTCCAGATCAAGAGTATAAG
Seq A exon
GTATTTACATTTTTTCCTTCTTTCCTGAACTTTGGTCACCTTTCTTTGCCTTGTCAACATTAAATCTTTTTGATGTATTTCTCAGCTCAGTTGCCAAAAGAGGGCCTACATAAAGCACAGTATTTTAGATCTGAATCAAAGCACTTTTACAGAGTGGGATCCTTAGGGTTACCGTTCTGCATGAGACTTGGTCCAGAGAAATTGCTGGGGAACAAACAAAAGCACAATTACACAAATAAATATGTAGTTAAAAATTATAGTAAATTCTCTAAAGGAGAAAGATGCAACATGCTTTGAGAAAATGTTTAATGGGGACAACTGAATTTAGATTGTGAGATTCAGCATGGGAAAAGCTCAGAGTTAGTAGCTTCTGGCCATAACTGTTAAGACACAATAGTATTGACTCATGTACACATGTAGATGAGTGAAGTCTCTAGTCTCAGAGGGTGTGGACCCACCAGTTACTCTTGTATGGTTATGGCAAAGTTATACAGCCTTGTATCTGAAAAGACAGTGAATCATGGGTTAGCTCTTCTTATGGTTTAAAAAGTAAAGCCTCTTTAGGAGTGACACTTTAATAATGCTGTTTTGTGTGTTTATGTCTCCTTAAGAAAATAATAGATGAAGTGTATATGGTACACAAAAAAGAAAACTTAAATATTGGTTGGCTTTCAGATCAAATAGGAAAAAATATCATTACTTTTGGAGTAGTCACATTGACTCACTTATTGTTTAGTTGTGTAAACAACTTGATGATTTTCAAATGAGACTTTAGATTTTATTGCTAAAGTAGTTAGCACAGGACAAAGACATACTTTGACATTAGTGAATTGATACCTTTGTGCAAAGTGAAGATTTGTGTTTTTAAACCATCTTTGTAATTGCTTTAAAACATTAATAATTTAAAATGCATATTGAATATTTTTTTAGCTATCAAACTATTTTGCAAATTTTCAAAAAAGGGACAAATTTACATTTGTACAGTGACTACCGTCATTGAAATTACTTTTCCAATTGTCTTGGACATTGTCATAAGCTAATCATAGCTTAGTTTTATAAATTTTATACTTTATAATTTATACTTTTTACTTTATACCATTTTATACTTTAAAATGCTAATAATATAATACGTTGAAAATGTGCCAGCAAAATTAAACTGTGTTTTTTTCTTCCTGTTTAAAACATTTTACAG
Seq C2 exon
GTTGCTTTTACAAAAACTTTTGTTCAGCATTATGCTTTCATTATGAAGACACTGAAGAAAAGTCATGAATCGGACACTATGTCTAACAGAATTGTGCATATTAGTGTTCAGTTGTTCAGCAATGAAGAGCTAGCCAGACAGGTAACAGAAGAATGTCAGCTGCTGGATATTATGGTCACTGTGCTGTTATACATGATGGAAAGTTGCCTTATTAAAAGTGAGCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020296:ENSBTAT00000061386:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0065015=CRAL_TRIO=PU(63.1=84.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTTAGAAGAGCTATTGTTTTGGA
R:
CTTGTAGCTCACTTTTAATAAGGCA
Band lengths:
326-1518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]