MmuINT0169557 @ mm10
Intron Retention
Gene
ENSMUSG00000044308 | Ubr3
Description
ubiquitin protein ligase E3 component n-recognin 3 [Source:MGI Symbol;Acc:MGI:1861100]
Coordinates
chr2:69935892-69938312:+
Coord C1 exon
chr2:69935892-69936022
Coord A exon
chr2:69936023-69938083
Coord C2 exon
chr2:69938084-69938312
Length
2061 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
GCTATTTAAAAATTTTACAGGTT
3' ss Score
6.44
Exon sequences
Seq C1 exon
ATCAATCCATAATGGATGTTTTGAAACATAAAAGTTTTTTAGAAGAACTATTATTTTGGACAATAAAGTATGAGTTCCCACAGAAGATGGTAACTTTCTTGCTCAATATGCTCCCAGATCAAGAGTATAAG
Seq A exon
GTATCTATTACTGCTTCCTTATGGAACTTTGTTTTCACTGTTTTTTTTTATTGTTTGATCTTGTTCTTGTTGCATTTCTTAGCTGAGGCTCATTATAACATAAGGATAAGGATATAATATGAAAGCTTTATTTCCCGTTGAACGTCTGCTCGGAATACACAGAATCTTAGCTTTCTCTCAACTTAGCATTACTCAGCAGAATTGCCATTTCAAATTTAAAACTATTATAAACACTATCATCTAAGGATATAAAATTTTACTTGCTCACAGTTACACATCAGTTTTATCTTTGTTCTGTGAGGCCTACAACAAGATCTAAAGTCCTAGCTAGAAACCACTAGAGTAACATTACTAAACAAGTGGAACTCTGTGTGAAGGCAGTGGTGGGAGATAAACAGTAATAAAGTAAGTGCAGAGGTGAGTGATCTGTAACCAAGTGTTGAGTCCGCTGAAGGACAGTTACAAGGTGCTGCTGCACCATGGAACGGGGTGACTGAGCTTACGTTAGGGATCAGCGTGGGTTATGCTGCTAATGGGAGGACAGTTACTAATCAGATACAAGTGTAGGGAGGGACACCTCTGAGCACCATATGATATGCTTATGGCAAAATGACATAGCTCAATGTCTCAAAAGAACAAAGTGTGCAGTGGTCCTTTGAGTATTAGGAGAGACACTCTCAAGTAGCATTATCGTGGGCCTTTTTATACTCTTAAAACATGCAACAGGAAATTTATTTGTGACATAGGAAATAAATCCAGCCATAATTGATACTGCAGGCATTTGGCCAGATTGCTGGTCAGCTTTCAGAGCAGGTGGGAGGTTATTTCTTGTGGGGATAATCATATCACCTTGATTGTTTAGTGATGTTATTCTGATGGTTTCTAGCCAGGACTTTAGGTATTATTTTTGTAGATCTCTTGGAACAAAGATACTTTTTTTTTTTTTTTTAAATAAAGCCAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAGGATTTCTCTGTGTAGCCCTGGCTGTTCTGGAACTTACTCTATAGTAGTGCCGTGAACTCCGAAATCTGATGTTCACCACCATCACTCTGCTTAAGATAATTTTTCAAGAAATGGATGTAACTTTGAGCAAGTAAAATTTTATATTCTTGCCTTTTTTTTCTTTAAGATTTATCTATTATATGTAAGCACACTGTAGCTGTCTTCAGACACTCCAGAAGGGGGAGTCAGATCTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTAGGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCAAATTTTATATTCTTAAACCACAGTTTATAATCATTTCAAAACTTAAATGGGTTAAAATATTATTAACTTTTTAAAACTATTAAAGTATTTTAGTAATGTTTCATAAATGGTAAAATATGACTTAAAATTATCATCATTATTTAATTACCTGGTATAACATCATATGGTACTAACAGCTTTAAAAGCTGATTATAGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACCAACTGCTCTTTCAAAGGTCCTGCGTTCAAATCCCAGCAACCACATGGTGACTCACAACCACCCGAGATGCAATCTGAAGCCCTCTTCTGATGTATCTGAAGACAGCTACATGTGTACTTACATATAATAAATAAATCTTTTTTTTTTTTTTTTTTTTGGTTTTTCAAGACACAAGACAGGGTTTCTCTGTATAGCCCTGCCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAATGTGTGCACCACCACCGCCCGGCAATAAATAAATCTTTAAAAAAAAATTAAAACTATCTTTGAAATGATAGATAATAATGACACAAACAGGCTTATGATGTAGTTATTTATTTTAAAAAAAGCTGATTATAATATGTGATATAAAATACTAACAGCATTTTAAATTTGGAATTAAGCTGATGTTTTCTTGTTTGCTATTTAAAAATTTTACAG
Seq C2 exon
GTTGCTTTTACAAAAACATTTGTTCAGCATTATGCTTTTATTATGAAAACACTGAAGAAAAGTCACGAATCAGATACAATGTCCAACAGAATTGTGCATATTAGTGTTCAGTTGTTCAGCAATGAGGAGCTAGCCAGACAGGTGACAGAAGAGTGTCAGCTCCTGGACATCATGGTCACTGTGTTGTTGTACATGATGGAGAGCTGCCTCATCAAGAGTGAGCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044308:ENSMUST00000055758:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0065015=CRAL_TRIO=PU(61.2=77.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types