GgaINT0046785 @ galGal3
Intron Retention
Description
NA
Coordinates
chr7:20005699-20011008:-
Coord C1 exon
chr7:20010850-20011008
Coord A exon
chr7:20005928-20010849
Coord C2 exon
chr7:20005699-20005927
Length
4922 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTT
5' ss Score
8.4
3' ss Seq
AATTTCTTAATGATTTACAGGTT
3' ss Score
6.88
Exon sequences
Seq C1 exon
ACATCCCCTCCTCCAACCTTTTATGCAGATCAGTCTATCATGGATGTTTTGAAGCATAAATGTTTTCTAGAAGAATTATTGTTTTGGACAATAAAATATGAATTTCCACAGAAGATGGTGACTTTCTTACTCAACATGCTGCCAGATCAGGATTATAAG
Seq A exon
GTACTTGTCTTGTGTCATTCACACTGAAGCATCTTTTTCTAATTCTCATATTTAGTATGTATTATGCCTTACAAAAGACTGTATACCTTTATATCTGAATAATAAGCAGTCAAACAGTGCAGGTCATTTACTTGGTTATGGTTATTTTCTTAGTCTGGAGCACGTAGTATTTGAAGAGAGAAGTGGACAAAACGAGGTTGATAACTTCTGGAACAGCAGTATTAATTTTGTTCTCACGTTTTGTATGTTTTGCTCTTTGTTGTTTTTCTCCTCTCATCTGGCTGTTAGTTCATGTTTGCACATGTTGGATTTTTAATTTTATTTTACTCTGTAAAGTGGATTTGCATTGGTCAGAAATGTGGATCAAAGCTAAACAATCCTGCAATGTAGCATGTCTGTTACATTATTGTTCCTGTTGAAACTGATGTAGTAGACAGTAATTTCTCCATCTAGGCCTTCATGGTGTGAGTGTTCTTGCTGCAGCTATGCCCTGTGCAGCTTTGGCAGCCTTCCAGCTGTTTCCTTACAGAGCTTTGCAGTTGTCCATACCAAGTATCTCCTGGCTTGGAGTCATGGAGACTGGATGTCATCTTCCTGTTTTAAATCTTGGTGTGCAGCCAGGTTTGGTTGTTTGCTCTACATGTTCCAAGACCTAATATACATAGCAGTCAGGCTTAACATTTTGCTCTGATCGTGTCATATCTTTGAGCCATGCTAAAGTTTTGGATCTTTTCAATTCCTGATGGGAGGCAAGATCAAGAAATCCTTAATTCTGAGTGTGCAGATTTCTTCAGATATGCCCCTTTATAATGGGGCTGTCCTTCATTCATGCTCCTTAAAACCTTGCCACATTGGAGCAAAGGATATGAAGATAACTTGCGAAAAAAGGGAAGGATAATACATGAATCTTCATCTATACTTCGTCCATGTCAAGACAGTATTTTGATTTGGGATACCAGCTTAGATTCATCTTGGTCTTGGATTCAGCTAACACAAAAGAAGACATGAGGACTTCTCAACTGATCATCTCTTACCATAAAGCTTGTTCTTCTTCATATTTGGAGACTCGTGGACATTCAGTTCTCCTGACCATTTGCCAGCTTAACACTTGCCTGTGAGAACACCTGAGCACTAGCAGCAAACACGGGAATCTGGTAAGTGTTGCTATGTTTACCTTCATACTGCACCATGTAGTAACCACAGTTTTTAATGAGCTTAGGATCATTTTTCATTGGCAAGAAGCCTTAGTCTTCAGTGAATGTCTTCATTGTCGTCATAATGTTCTTTCACTGTGTGCTGAGAATGTAGATTTTGGTATATTTGCTTCCTCTGCTGACTGCCACCATTTATCTGTAAGCAGTCTGTCTTTCAGCCGCTGTATTGTATGTTCAAACTAAAGAATTACTTAAGCATTGCTTTTGTTCTTTTTAGCAAGTTAATTGTTTGATTAAACAGCGCTTAACTCAGCTCCTATGTACAGGCTTAGTATTAGCACAGCTCCTAGGTATTTGAAATCTTTTAGAATCTTTTTTTTTAAATTGTTGTGATTGTCTGAATGGGATTTTTCAACAGTAAGCGAACTCAGAGCAGGAAGTACCTGTAGGGACATAAACGTTCTAGAATGATCTCTCAGCTTTCTGTGACTTTCTCCTATTTCATCTATACCAGTGTACTGTCATCTTAATTTTTTTTGCTGTTGCTCTTGTGATTCTTCCTGAGCTCGTTAAACCACCAGAATTCTTCTGCGAAGTTGGTTTTCTGATAAATTGAGCTCACTAGCCAGACAGGTGGGCACAGAGCTGGCAGTGTCTGTGCATGTGTGGAATTTGCTGAAGTCTCTCATCTCCAGCATAAACGTAGTACAGCTGACTAACTCCACCATAGCCTACACAGGAGTCAGTGAACCTCCAGCAATCTGTTTGCACAGATTTTTTTAAAACAGGAGAACAAGTATTTTTTCTAGGGTTTGAGTATTGGGAAGAGATGTTGAAAATGATAGGCTGAAATACTGTTAACTAGCTTTATGATCTTTTCTTTACAGCACTTATGCCTGAGGCATCTCTTCTGGCACTCTGACATTTGAAAATGAGAAGACTTGCAAGTGAAGAAAAGGAGAACAGCAGAGAAACTTACTGGAGCTTCCAAGAAATTACAGGAACTGACCTTCATGTAACCAAGGAGAAAGCAAAGCAGTGGTTGGCTCTAAGCAGGAGTCTGGAGTAGTAAAGTTCATCCAAGAGCAGTGCTCTACTCTGATTTGGAATAACCAAAGTGGTGAAATGCAAAAGCATCTGATAATGAATCAACAAAGATGTTTATTAGAAGTTCATTGCATCTTCAGACATCTCCCATAGTGAAGGTTGAGGTAGTTAGAGTAATAGGACTTCACCGATTCCCAAATGCACTGTTCAAATGTACAAATTCTGTAGAATAGTTTGTCTATTGGAATCTAAACTTTAGTGCAACTTTCACCTGGCAGCATGGGAGGTGAAAGTTCTCTCTGACTGAACCAGGGCTTTGATGTTAGGATCCAAAAAATGTGAAATTGTTGAGTGGCAACCAAGAGGAAAGGTGAGATGAAAAAAGTAACTCCTTTTTTAACATAGGCTAGAAATTCAGGGGCTGTGCAAGATCATACAGAGTCAGTGAAGGTAATTAAATGTACAGAAAATGTGTCTGTTTTAGGAAGCCACTTCTTGCAAATGTTTGGAAACTGAGTACTTGAAAAAACGTCTTATGTCATATTTTCATTTTTGTGCCATTTTGTTTTTTCTTGTAGTTTATACAGTGTTAGCCCCAAAGACAGGACACTGAGTTGATTGGACTGATTAAACTCACTGTGTAGCTATTCTAATATAAGGACTGTTCTAATTCTAATATAAGCTATTCTAATATAAGTTAACCACTGTATTTCAGCATTTTAACTTCTGAAACTGAGTTTGTTTCTTCTCTCAAAATTGGAAAGGGCTGTGTTTGTTCAAGTTACAAACGAATGTATGCGTAAAGCTTAAGCCTTTTCTTTAAGTGTCTTATGGAATCTCTGTCATTACACTATGGAGGTGATGACTCTACTTTCAGAAATTTATTATCGTACATATGAGGCACAGAAAGCACTGATGTGTGCTCATTTAAATAAATCTGGAAATTGACTGTAGAAGAGGACCACGTACTTGCAACTAACTTGTTTTACAAAGCTCTGTTATTTCAGGAAAAACATAATTCCTATAGGACAGAGACTTAGAATACTATTCAAACTTGATACAGTATGAAAAAGTAGCAGGCTGAAAATGAGGACTGTGAAATTGTTTGCTAAATTGCATGTTGTTTTAGTGTTGCTGCAGTGTACTATTAAAGTATCTTATTAAAATAATGCTACTAGCATTAATGTACTAACTTAAGATACCAAATGTGTCAGTTGTGTCTGAGGCTTAACATCAGTAGTGTTTGTTATAGATGTCATTGCTAATGATTTCAGTTGTATCAAACTTCATTTTAAAGCAATTTGTATAGTAGGTTGTTTGAGCCTGGAATGCAGAATGCTACTGTAGTAACTTTGAGCAAGTTAGATAGTATATGAATATGTTAGAATGTATTGGCTGCAAATAATCACCATTGTGCTGGATGCTGTGCATAGAAGATGTTTTCTATTTCTATACAGGTTACCATTGTTTTGGACTAGTTAAAGCAGGACAAGTTAAGCTGTGTAGTAATGTCTCCTGCAGTGACATACTCACCCTAGTTTGTTTGGTTGCATATTTATTTTTGCATCAGCAACTTGATCTTTAGTTTTCAGGATATTTGCTGGAAGAAGCTGTCTTTGTGCCTCACAACAGTGTGTTACATTGTAGTGGTATTTTTGGGAATGTCCTCTAAATGACAATAACGTGGTAGTGCTATAGTAGAAATATGGGAGTATAAAGTTTGAGGCAGGTAAGATTAGTGATTTGTGTACAGTCTAGTGAAAGCACACCTGACATAGAGTGGTTTTAGAGTCCTTCTTCTATGCTTATGAAAGATTCATACCAAGAAGGAACAGACATGGAGTTTTGGGCTTTGAGCTGAAAATTTTCATCACTCTGCGGCTTGTATTTTCTTTTCCTATAAAGCAAAGCAAGTGCAGATGGTGTTAATTCAGAACTTAAAGTACTGAATGAGAAGTGATTTCAAAGTTGGCAGATTGCCCAAGTGTATGTGCAGTGCATAAAGTTGGTTTACAATCAACTGAAGAGTAGCAAGGTGTACTAAGACTCATATTTATCAATATACTTAAATACTGGCCTGATTTTAGAAAAAAACAGTTGTGTCATTAACGAGCTTTGCTTCTCATTACACAATTATTTAAGAGAGTGCTAAAGATTTATTAAAAAGAAATAGGATACTATGATAGTAGGTGAAATTCACTGTTGAAACATCATCCTTGACAGATGAATCAGGATGTTACTCAATAGACAGATGATCTCAAGTGTTCAAGTTACAGCTGTTTTATTAGCTGCCACTGGTTTCATTGTTTGTGGGGTATCATTCTGGGACATCGCACCCAGTTTTAGGTTGTGGAAAAAAAAATATGATTAATGTTCTAACATGACTGTTCTCACATGCATGTTGTGACCTTACATTCCGTGTTCCAACATTTCTGTGTTCATGGATTTCATTCTTTTTCCTCACTGAAGAATGTATAGAATAAGATGATTTAATTTTGAAGTTATGTGGTAAAGTTGGACATGTAAGGTATTCCTTCCTATAAATAGGCATTTTCATATGAACTATTTCTAGAAACTAGACACAGGACCATCAGTTTTGATTTGTCATGGCAATTTGATGCTCCAAGGATGTACTGATCGTGGTTCTGTAAAGGAAAAATGGAAGAAAGAAAACAATAATTTGTGGTGCTTGTTAACATCAAATTTCTTAATGATTTACAG
Seq C2 exon
GTTGCTTTTACCAAAACTTTTGTTCAGCATTATGCTTTTATTATGAAAACACTGAAGAAAAGCCATGAGTCAGACACGATGTCTAACAGAATTGTGCATATCAGTGTTCAGTTGTTCAGCAATGAAGAACTAGCACGCCAAGTAACGGAAGAATGTCAGCTGCTGGATATTATGGTCACAGTTCTGTTATATATGATGGAAAGTTGCCTTATTAAAAGTGAATTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009671:ENSGALT00000038533:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0065015=CRAL_TRIO=PU(63.0=81.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]