HsaINT0176838 @ hg38
Intron Retention
Gene
ENSG00000144357 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr2:169895181-169896735:+
Coord C1 exon
chr2:169895181-169895311
Coord A exon
chr2:169895312-169896506
Coord C2 exon
chr2:169896507-169896735
Length
1195 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
TTCTATTAAAATGTTTACAGGTT
3' ss Score
6.4
Exon sequences
Seq C1 exon
ATCAATCCATAATGGATGTTTTGAAGCATAAAAGCTTCCTAGAAGAACTATTATTTTGGACTATAAAATATGAATTCCCTCAAAAGATGGTAACTTTCTTACTCAACATGCTTCCAGATCAAGAGTATAAG
Seq A exon
GTATCTATATATTTTCCTGCTTTTCTGAACTTAGCTTTTCTTTCTTTGCCTTTCATTATTAAATCTTTTTTTGATATATTTCTCAGGTGAAGGTTGATATAACACTATAAACAAGTGTTAGTTTCTTCTCTTGATAACACAAGTTCTTCACAAAAGGCACAGTGTCTTAGCTTTGTGGCAAAGCAGCATTACTCAGCAGAATTCCAAAGGATTGCTTTTCTGCATGGAACTTGGTCTGGAGGGAATGCTGGGGAACAAACATTGAAACCACAATTTTTATTTTGCAGAAATAAATATGTAGTTACAAATTGTTCTAAATCCTCTGAAGAAGAGTACAAGGTGCTATAAGAATGTTTAATGGGGGCAATTGAATTTAGATTGTGAGATCAGGCTGGGAAAAGCATGGGTTGAAAAGTTGCTGGTCACAACTGCTAAAGAGAGAACAGTTATTGACTCATATACAAATGTTGGCAGGTGAAGTTTCTAGTCCCAGGGGGTCAGAACCCACCTGTTACTATCTTACGGTTATGGCAAAATGACGAAGCTCGGTGTATGAAAAGAAAATAAAGCATGCTGTTATTTTTATGGTGTAGGTTAGGAGAGACACTTTGATAGTGTCATTGTTTTGTGTGTCTTTATATCTGCTAAAAAAAAAAACCAGAGAAAATGTACATGTAAAGGAAATAAGAGTAAAAATAAATACGGCTGGGCGTGGTAGCTCACGTCTGTAGTCCCAGCACTTTGGGAGGCTGAGGTGGGCAGATCACCAGAGGTCGGGAGTTTGAGATCAGTCTGGCCAAACCCCATCTCTACTGAAAATACAAAAATTAGTTGGGCGTGATGGCGTGTGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACTGGGGAGGCGGAGGTTGCAGTGAGCTGAGATCATGCCATTGCACTCAGGCTTGGGGACAGAGCAAGACTCCGTTTTGGGGGAAAAAAATTTTTTTTTTTTCTTTAACCATCAAAATATTTTGCAAATGTTCCAAAAAAGTGAAAGACTACCTCACCATCGAGATTTTTTTTAAGTTATCTTGGGCATTATTATAAATTAGTAATAGCTGTAAAATGTTAACATGATATATTGAAAATGATTTTAAATTAAAAATTAAAACTAATGTGTTTTTTCCTTTCTATTAAAATGTTTACAG
Seq C2 exon
GTTGCTTTTACAAAAACTTTTGTTCAGCATTATGCTTTCATTATGAAAACACTGAAGAAAAGTCATGAATCAGACACAATGTCTAACAGAATTGTGCATATTAGTGTTCAGTTGTTCAGCAATGAGGAGCTAGCCAGACAGGTAACAGAAGAATGTCAGCTGCTGGATATTATGGTCACTGTGCTATTATACATGATGGAAAGTTGCCTTATTAAAAGTGAGCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144357:ENST00000272793:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0065015=CRAL_TRIO=PU(59.6=72.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATAATGGATGTTTTGAAGCAT
R:
TGTAGCTCACTTTTAATAAGGCAAC
Band lengths:
353-1548
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains