GgaINT0046785 @ galGal4
Intron Retention
Gene
ENSGALG00000009608 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr7:18042376-18047657:-
Coord C1 exon
chr7:18047527-18047657
Coord A exon
chr7:18042605-18047526
Coord C2 exon
chr7:18042376-18042604
Length
4922 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTT
5' ss Score
8.4
3' ss Seq
AATTTCTTAATGATTTACAGGTT
3' ss Score
6.88
Exon sequences
Seq C1 exon
ATCAGTCTATCATGGATGTTTTGAAGCATAAATGTTTTCTAGAAGAATTATTGTTTTGGACAATAAAATATGAATTTCCACAGAAGATGGTGACTTTCTTACTCAACATGCTGCCAGATCAGGATTATAAG
Seq A exon
GTACTTGTCTTGTGTCATTCACACTGAAGCATCTTTTTCTAATTCTCATATTTAGTATGTATTATGCCTTACAAAAGACTGTATACCTTTATATCTGAATAATAAGCAGTCAAACAGTGCAGGTCATTTACTTGGTTATGGTTATTTTCTTAGTCTGGAGCACGTAGTATTTGAAGAGAGAAGTGGACAAAACGAGGTTGATAACTTCTGGAACAGCAGTATTAATTTTGTTCTCACGTTTTGTATGTTTTGCTCTTTGTTGTTTTTCTCCTCTCATCTGGCTGTTAGTTCATGTTTGCACATGTTGGATTTTTAATTTTATTTTACTCTGTAAAGTGGATTTGCATTGGTCAGAAATGTGGATCAAAGCTAAACAATCCTGCAATGTAGCATGTCTGTTACATTATTGTTCCTGTTGAAACTGATGTAGTAGACAGTAATTTCTCCATCTAGGCCTTCATGGTGTGAGTGTTCTTGCTGCAGCTATGCCCTGTGCAGCTTTGGCAGCCTTCCAGCTGTTTCCTTACAGAGCTTTGCAGTTGTCCATACCAAGTATCTCCTGGCTTGGAGTCATGGAGACTGGATGTCATCTTCCTGTTTTAAATCTTGGTGTGCAGCCAGGTTTGGTTGTTTGCTCTACATGTTCCAAGACCTAATATACATAGCAGTCAGGCTTAACATTTTGCTCTGATCGTGTCATATCTTTGAGCCATGCTAAAGTTTTGGATCTTTTCAATTCCTGATGGGAGGCAAGATCAAGAAATCCTTAATTCTGAGTGTGCAGATTTCTTCAGATATGCCCCTTTATAATGGGGCTGTCCTTCATTCATGCTCCTTAAAACCTTGCCACATTGGAGCAAAGGATATGAAGATAACTTGCGAAAAAAGGGAAGGATAATACATGAATCTTCATCTATACTTCGTCCATGTCAAGACAGTATTTTGATTTGGGATACCAGCTTAGATTCATCTTGGTCTTGGATTCAGCTAACACAAAAGAAGACATGAGGACTTCTCAACTGATCATCTCTTACCATAAAGCTTGTTCTTCTTCATATTTGGAGACTCGTGGACATTCAGTTCTCCTGACCATTTGCCAGCTTAACACTTGCCTGTGAGAACACCTGAGCACTAGCAGCAAACACGGGAATCTGGTAAGTGTTGCTATGTTTACCTTCATACTGCACCATGTAGTAACCACAGTTTTTAATGAGCTTAGGATCATTTTTCATTGGCAAGAAGCCTTAGTCTTCAGTGAATGTCTTCATTGTCGTCATAATGTTCTTTCACTGTGTGCTGAGAATGTAGATTTTGGTATATTTGCTTCCTCTGCTGACTGCCACCATTTATCTGTAAGCAGTCTGTCTTTCAGCCGCTGTATTGTATGTTCAAACTAAAGAATTACTTAAGCATTGCTTTTGTTCTTTTTAGCAAGTTAATTGTTTGATTAAACAGCGCTTAACTCAGCTCCTATGTACAGGCTTAGTATTAGCACAGCTCCTAGGTATTTGAAATCTTTTAGAATCTTTTTTTTTAAATTGTTGTGATTGTCTGAATGGGATTTTTCAACAGTAAGCGAACTCAGAGCAGGAAGTACCTGTAGGGACATAAACGTTCTAGAATGATCTCTCAGCTTTCTGTGACTTTCTCCTATTTCATCTATACCAGTGTACTGTCATCTTAATTTTTTTTGCTGTTGCTCTTGTGATTCTTCCTGAGCTCGTTAAACCACCAGAATTCTTCTGCGAAGTTGGTTTTCTGATAAATTGAGCTCACTAGCCAGACAGGTGGGCACAGAGCTGGCAGTGTCTGTGCATGTGTGGAATTTGCTGAAGTCTCTCATCTCCAGCATAAACGTAGTACAGCTGACTAACTCCACCATAGCCTACACAGGAGTCAGTGAACCTCCAGCAATCTGTTTGCACAGATTTTTTTAAAACAGGAGAACAAGTATTTTTTCTAGGGTTTGAGTATTGGGAAGAGATGTTGAAAATGATAGGCTGAAATACTGTTAACTAGCTTTATGATCTTTTCTTTACAGCACTTATGCCTGAGGCATCTCTTCTGGCACTCTGACATTTGAAAATGAGAAGACTTGCAAGTGAAGAAAAGGAGAACAGCAGAGAAACTTACTGGAGCTTCCAAGAAATTACAGGAACTGACCTTCATGTAACCAAGGAGAAAGCAAAGCAGTGGTTGGCTCTAAGCAGGAGTCTGGAGTAGTAAAGTTCATCCAAGAGCAGTGCTCTACTCTGATTTGGAATAACCAAAGTGGTGAAATGCAAAAGCATCTGATAATGAATCAACAAAGATGTTTATTAGAAGTTCATTGCATCTTCAGACATCTCCCATAGTGAAGGTTGAGGTAGTTAGAGTAATAGGACTTCACCGATTCCCAAATGCACTGTTCAAATGTACAAATTCTGTAGAATAGTTTGTCTATTGGAATCTAAACTTTAGTGCAACTTTCACCTGGCAGCATGGGAGGTGAAAGTTCTCTCTGACTGAACCAGGGCTTTGATGTTAGGATCCAAAAAATGTGAAATTGTTGAGTGGCAACCAAGAGGAAAGGTGAGATGAAAAAAGTAACTCCTTTTTTAACATAGGCTAGAAATTCAGGGGCTGTGCAAGATCATACAGAGTCAGTGAAGGTAATTAAATGTACAGAAAATGTGTCTGTTTTAGGAAGCCACTTCTTGCAAATGTTTGGAAACTGAGTACTTGAAAAAACGTCTTATGTCATATTTTCATTTTTGTGCCATTTTGTTTTTTCTTGTAGTTTATACAGTGTTAGCCCCAAAGACAGGACACTGAGTTGATTGGACTGATTAAACTCACTGTGTAGCTATTCTAATATAAGGACTGTTCTAATTCTAATATAAGCTATTCTAATATAAGTTAACCACTGTATTTCAGCATTTTAACTTCTGAAACTGAGTTTGTTTCTTCTCTCAAAATTGGAAAGGGCTGTGTTTGTTCAAGTTACAAACGAATGTATGCGTAAAGCTTAAGCCTTTTCTTTAAGTGTCTTATGGAATCTCTGTCATTACACTATGGAGGTGATGACTCTACTTTCAGAAATTTATTATCGTACATATGAGGCACAGAAAGCACTGATGTGTGCTCATTTAAATAAATCTGGAAATTGACTGTAGAAGAGGACCACGTACTTGCAACTAACTTGTTTTACAAAGCTCTGTTATTTCAGGAAAAACATAATTCCTATAGGACAGAGACTTAGAATACTATTCAAACTTGATACAGTATGAAAAAGTAGCAGGCTGAAAATGAGGACTGTGAAATTGTTTGCTAAATTGCATGTTGTTTTAGTGTTGCTGCAGTGTACTATTAAAGTATCTTATTAAAATAATGCTACTAGCATTAATGTACTAACTTAAGATACCAAATGTGTCAGTTGTGTCTGAGGCTTAACATCAGTAGTGTTTGTTATAGATGTCATTGCTAATGATTTCAGTTGTATCAAACTTCATTTTAAAGCAATTTGTATAGTAGGTTGTTTGAGCCTGGAATGCAGAATGCTACTGTAGTAACTTTGAGCAAGTTAGATAGTATATGAATATGTTAGAATGTATTGGCTGCAAATAATCACCATTGTGCTGGATGCTGTGCATAGAAGATGTTTTCTATTTCTATACAGGTTACCATTGTTTTGGACTAGTTAAAGCAGGACAAGTTAAGCTGTGTAGTAATGTCTCCTGCAGTGACATACTCACCCTAGTTTGTTTGGTTGCATATTTATTTTTGCATCAGCAACTTGATCTTTAGTTTTCAGGATATTTGCTGGAAGAAGCTGTCTTTGTGCCTCACAACAGTGTGTTACATTGTAGTGGTATTTTTGGGAATGTCCTCTAAATGACAATAACGTGGTAGTGCTATAGTAGAAATATGGGAGTATAAAGTTTGAGGCAGGTAAGATTAGTGATTTGTGTACAGTCTAGTGAAAGCACACCTGACATAGAGTGGTTTTAGAGTCCTTCTTCTATGCTTATGAAAGATTCATACCAAGAAGGAACAGACATGGAGTTTTGGGCTTTGAGCTGAAAATTTTCATCACTCTGCGGCTTGTATTTTCTTTTCCTATAAAGCAAAGCAAGTGCAGATGGTGTTAATTCAGAACTTAAAGTACTGAATGAGAAGTGATTTCAAAGTTGGCAGATTGCCCAAGTGTATGTGCAGTGCATAAAGTTGGTTTACAATCAACTGAAGAGTAGCAAGGTGTACTAAGACTCATATTTATCAATATACTTAAATACTGGCCTGATTTTAGAAAAAAACAGTTGTGTCATTAACGAGCTTTGCTTCTCATTACACAATTATTTAAGAGAGTGCTAAAGATTTATTAAAAAGAAATAGGATACTATGATAGTAGGTGAAATTCACTGTTGAAACATCATCCTTGACAGATGAATCAGGATGTTACTCAATAGACAGATGATCTCAAGTGTTCAAGTTACAGCTGTTTTATTAGCTGCCACTGGTTTCATTGTTTGTGGGGTATCATTCTGGGACATCGCACCCAGTTTTAGGTTGTGGAAAAAAAAATATGATTAATGTTCTAACATGACTGTTCTCACATGCATGTTGTGACCTTACATTCCGTGTTCCAACATTTCTGTGTTCATGGATTTCATTCTTTTTCCTCACTGAAGAATGTATAGAATAAGATGATTTAATTTTGAAGTTATGTGGTAAAGTTGGACATGTAAGGTATTCCTTCCTATAAATAGGCATTTTCATATGAACTATTTCTAGAAACTAGACACAGGACCATCAGTTTTGATTTGTCATGGCAATTTGATGCTCCAAGGATGTACTGATCGTGGTTCTGTAAAGGAAAAATGGAAGAAAGAAAACAATAATTTGTGGTGCTTGTTAACATCAAATTTCTTAATGATTTACAG
Seq C2 exon
GTTGCTTTTACCAAAACTTTTGTTCAGCATTATGCTTTTATTATGAAAACACTGAAGAAAAGCCATGAGTCAGACACGATGTCTAACAGAATTGTGCATATCAGTGTTCAGTTGTTCAGCAATGAAGAACTAGCACGCCAAGTAACGGAAGAATGTCAGCTGCTGGATATTATGGTCACAGTTCTGTTATATATGATGGAAAGTTGCCTTATTAAAAGTGAATTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009608:ENSGALT00000015660:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0065015=CRAL_TRIO=PU(12.3=36.4)
A:
NA
C2:
PF0065015=CRAL_TRIO=FE(64.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]