GgaEX0014319 @ galGal4
Exon Skipping
Gene
ENSGALG00000009608 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr7:18041491-18047657:-
Coord C1 exon
chr7:18047527-18047657
Coord A exon
chr7:18042376-18042604
Coord C2 exon
chr7:18041491-18041670
Length
229 bp
Sequences
Splice sites
3' ss Seq
AATTTCTTAATGATTTACAGGTT
3' ss Score
6.88
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
ATCAGTCTATCATGGATGTTTTGAAGCATAAATGTTTTCTAGAAGAATTATTGTTTTGGACAATAAAATATGAATTTCCACAGAAGATGGTGACTTTCTTACTCAACATGCTGCCAGATCAGGATTATAAG
Seq A exon
GTTGCTTTTACCAAAACTTTTGTTCAGCATTATGCTTTTATTATGAAAACACTGAAGAAAAGCCATGAGTCAGACACGATGTCTAACAGAATTGTGCATATCAGTGTTCAGTTGTTCAGCAATGAAGAACTAGCACGCCAAGTAACGGAAGAATGTCAGCTGCTGGATATTATGGTCACAGTTCTGTTATATATGATGGAAAGTTGCCTTATTAAAAGTGAATTGCAAG
Seq C2 exon
ATGAAGAAAATAGTTTACATGTTGTGGTGAATTGTGGTGAAGCACTACTGAAGAATAATACATACTGGCCCCTCGTTAGTGATTTTATAAACATACTTTCACACCAAAGTGTGGCAAAGAAGTTTTTGGAAGATCATGGTCTTTTGGTAACATGGATGAATTTTGTATCGTTCTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009608_CASSETTE6
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0065015=CRAL_TRIO=PU(12.3=36.4)
A:
PF0065015=CRAL_TRIO=FE(64.4=100)
C2:
PF0065015=CRAL_TRIO=PD(30.5=59.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTCTATCATGGATGTTTTGAAGC
R:
AATTCATCCATGTTACCAAAAGACCA
Band lengths:
292-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]