HsaEX6016637 @ hg19
Exon Skipping
Gene
ENSG00000144357 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:30467]
Coordinates
chr2:170751691-170761803:+
Coord C1 exon
chr2:170751691-170751821
Coord A exon
chr2:170753017-170753245
Coord C2 exon
chr2:170761624-170761803
Length
229 bp
Sequences
Splice sites
3' ss Seq
TTCTATTAAAATGTTTACAGGTT
3' ss Score
6.4
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
ATCAATCCATAATGGATGTTTTGAAGCATAAAAGCTTCCTAGAAGAACTATTATTTTGGACTATAAAATATGAATTCCCTCAAAAGATGGTAACTTTCTTACTCAACATGCTTCCAGATCAAGAGTATAAG
Seq A exon
GTTGCTTTTACAAAAACTTTTGTTCAGCATTATGCTTTCATTATGAAAACACTGAAGAAAAGTCATGAATCAGACACAATGTCTAACAGAATTGTGCATATTAGTGTTCAGTTGTTCAGCAATGAGGAGCTAGCCAGACAGGTAACAGAAGAATGTCAGCTGCTGGATATTATGGTCACTGTGCTATTATACATGATGGAAAGTTGCCTTATTAAAAGTGAGCTACAAG
Seq C2 exon
ATGAAGAAAATAGTTTACATGTGGTAGTGAACTGTGGAGAAGCATTACTGAAGAATAACACTTACTGGCCTCTTGTTAGTGATTTTATTAATATTCTTTCTCATCAAAGTGTGGCCAAGAGATTTTTGGAGGATCACGGTTTGTTAGTTACATGGATGAACTTTGTATCTTTCTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144357-'7-9,'7-7,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0065015=CRAL_TRIO=PU(63.1=84.4)
C2:
PF0065015=CRAL_TRIO=PD(35.9=60.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATAATGGATGTTTTGAAGCAT
R:
ACAAAGTTCATCCATGTAACTAACAA
Band lengths:
292-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)