BtaEX6009152 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020296 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr2:26494659-26503014:-
Coord C1 exon
chr2:26502884-26503014
Coord A exon
chr2:26501463-26501691
Coord C2 exon
chr2:26494659-26494838
Length
229 bp
Sequences
Splice sites
3' ss Seq
CTGTTTAAAACATTTTACAGGTT
3' ss Score
7.79
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
ATCAATCCATAATGGATGTTTTGAAACATAAAAGTTTCTTAGAAGAGCTATTGTTTTGGACAATAAAGTATGAATTTCCGCAGAAGATGGTGACTTTCTTACTCAACATGCTTCCAGATCAAGAGTATAAG
Seq A exon
GTTGCTTTTACAAAAACTTTTGTTCAGCATTATGCTTTCATTATGAAGACACTGAAGAAAAGTCATGAATCGGACACTATGTCTAACAGAATTGTGCATATTAGTGTTCAGTTGTTCAGCAATGAAGAGCTAGCCAGACAGGTAACAGAAGAATGTCAGCTGCTGGATATTATGGTCACTGTGCTGTTATACATGATGGAAAGTTGCCTTATTAAAAGTGAGCTACAAG
Seq C2 exon
ATGAAGAAAATAGTTTACACGTTGTAGTGAATTGTGGAGAAGCATTGCTGAAGAATAACACTTATTGGCCTCTTGTCAGTGATTTTATTAATATCCTTTCTCATCAAAGTGTGGCTAAGAGATTTTTGGAGGACCATGGTTTGTTAGTGACATGGATGAACTTTGTATCTTTCTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020296-'7-10,'7-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0065015=CRAL_TRIO=PU(63.1=84.4)
C2:
PF0065015=CRAL_TRIO=PD(35.9=60.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCTTAGAAGAGCTATTGTTTTGG
R:
TGAAAGAAAGATACAAAGTTCATCCA
Band lengths:
276-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]