HsaEX6016637 @ hg38
Exon Skipping
Gene
ENSG00000144357 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr2:169895181-169905293:+
Coord C1 exon
chr2:169895181-169895311
Coord A exon
chr2:169896507-169896735
Coord C2 exon
chr2:169905114-169905293
Length
229 bp
Sequences
Splice sites
3' ss Seq
TTCTATTAAAATGTTTACAGGTT
3' ss Score
6.4
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
ATCAATCCATAATGGATGTTTTGAAGCATAAAAGCTTCCTAGAAGAACTATTATTTTGGACTATAAAATATGAATTCCCTCAAAAGATGGTAACTTTCTTACTCAACATGCTTCCAGATCAAGAGTATAAG
Seq A exon
GTTGCTTTTACAAAAACTTTTGTTCAGCATTATGCTTTCATTATGAAAACACTGAAGAAAAGTCATGAATCAGACACAATGTCTAACAGAATTGTGCATATTAGTGTTCAGTTGTTCAGCAATGAGGAGCTAGCCAGACAGGTAACAGAAGAATGTCAGCTGCTGGATATTATGGTCACTGTGCTATTATACATGATGGAAAGTTGCCTTATTAAAAGTGAGCTACAAG
Seq C2 exon
ATGAAGAAAATAGTTTACATGTGGTAGTGAACTGTGGAGAAGCATTACTGAAGAATAACACTTACTGGCCTCTTGTTAGTGATTTTATTAATATTCTTTCTCATCAAAGTGTGGCCAAGAGATTTTTGGAGGATCACGGTTTGTTAGTTACATGGATGAACTTTGTATCTTTCTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144357_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0065015=CRAL_TRIO=PU(59.6=72.7)
C2:
PF0065015=CRAL_TRIO=PD(39.4=60.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATAATGGATGTTTTGAAGCAT
R:
ACAAAGTTCATCCATGTAACTAACAA
Band lengths:
292-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains