MmuEX6102006 @ mm10
Exon Skipping
Gene
ENSMUSG00000044308 | Ubr3
Description
ubiquitin protein ligase E3 component n-recognin 3 [Source:MGI Symbol;Acc:MGI:1861100]
Coordinates
chr2:69935892-69944479:+
Coord C1 exon
chr2:69935892-69936022
Coord A exon
chr2:69938084-69938312
Coord C2 exon
chr2:69944300-69944479
Length
229 bp
Sequences
Splice sites
3' ss Seq
GCTATTTAAAAATTTTACAGGTT
3' ss Score
6.44
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
ATCAATCCATAATGGATGTTTTGAAACATAAAAGTTTTTTAGAAGAACTATTATTTTGGACAATAAAGTATGAGTTCCCACAGAAGATGGTAACTTTCTTGCTCAATATGCTCCCAGATCAAGAGTATAAG
Seq A exon
GTTGCTTTTACAAAAACATTTGTTCAGCATTATGCTTTTATTATGAAAACACTGAAGAAAAGTCACGAATCAGATACAATGTCCAACAGAATTGTGCATATTAGTGTTCAGTTGTTCAGCAATGAGGAGCTAGCCAGACAGGTGACAGAAGAGTGTCAGCTCCTGGACATCATGGTCACTGTGTTGTTGTACATGATGGAGAGCTGCCTCATCAAGAGTGAGCTGCAAG
Seq C2 exon
ATGAAGAGAACAGTTTACATGTAGTGGTGAACTGTGGAGAAGCCTTACTGAAGAATAACACCTACTGGCCCCTTGTCAGTGATTTTATTAATATTCTTTCTCATCAAAGTGTGGCTCAGAGGTTTCTGGAGGATCACGGCCTGTTAGTTACATGGATGAACTTTGTGTCTTTCTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044308-'14-12,'14-11,15-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0065015=CRAL_TRIO=PU(61.2=77.9)
C2:
PF0065015=CRAL_TRIO=PD(37.8=60.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACAATAAAGTATGAGTTCCCACA
R:
TGAAAGAAAGACACAAAGTTCATCCA
Band lengths:
253-482
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types