GgaEX0014319 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr7:20004814-20011008:-
Coord C1 exon
chr7:20010850-20011008
Coord A exon
chr7:20005699-20005927
Coord C2 exon
chr7:20004814-20004993
Length
229 bp
Sequences
Splice sites
3' ss Seq
AATTTCTTAATGATTTACAGGTT
3' ss Score
6.88
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
ACATCCCCTCCTCCAACCTTTTATGCAGATCAGTCTATCATGGATGTTTTGAAGCATAAATGTTTTCTAGAAGAATTATTGTTTTGGACAATAAAATATGAATTTCCACAGAAGATGGTGACTTTCTTACTCAACATGCTGCCAGATCAGGATTATAAG
Seq A exon
GTTGCTTTTACCAAAACTTTTGTTCAGCATTATGCTTTTATTATGAAAACACTGAAGAAAAGCCATGAGTCAGACACGATGTCTAACAGAATTGTGCATATCAGTGTTCAGTTGTTCAGCAATGAAGAACTAGCACGCCAAGTAACGGAAGAATGTCAGCTGCTGGATATTATGGTCACAGTTCTGTTATATATGATGGAAAGTTGCCTTATTAAAAGTGAATTGCAAG
Seq C2 exon
ATGAAGAAAATAGTTTACATGTTGTGGTGAATTGTGGTGAAGCACTACTGAAGAATAATACATACTGGCCCCTCGTTAGTGATTTTATAAACATACTTTCACACCAAAGTGTGGCAAAGAAGTTTTTGGAAGATCATGGTCTTTTGGTAACATGGATGAATTTTGTATCGTTCTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009671-'12-18,'12-17,13-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0065015=CRAL_TRIO=PU(63.0=81.8)
C2:
PF0065015=CRAL_TRIO=PD(36.0=59.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCCCCTCCTCCAACCTTT
R:
TCTTCCAAAAACTTCTTTGCCACAC
Band lengths:
292-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]