RnoEX6017331 @ rn6
Exon Skipping
Gene
ENSRNOG00000008616 | Ubr3
Description
ubiquitin protein ligase E3 component n-recognin 3 [Source:RGD Symbol;Acc:1565257]
Coordinates
chr3:56173697-56180845:+
Coord C1 exon
chr3:56173697-56173827
Coord A exon
chr3:56175268-56175496
Coord C2 exon
chr3:56180666-56180845
Length
229 bp
Sequences
Splice sites
3' ss Seq
GCTATTTAAAAATTTTACAGGTT
3' ss Score
6.44
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
ATCAATCCATAATGGATGTTTTGAAACATAAAAGTTTTTTAGAAGAACTATTGTTTTGGACAATAAAGTATGAATTCCCCCAGAAGATGGTAACTTTCTTACTCAATATGCTTCCAGATCAAGAGTATAAG
Seq A exon
GTTGCTTTTACAAAAACTTTTGTTCAGCATTATGCATTTATTATGAAAACACTGAAGAAAAGTCACGAGTCAGACACGATGTCCAACAGAATTGTGCATATTAGTGTCCAGTTGTTCAGCAATGAGGAGCTAGCCAGACAGGTGACAGAGGAGTGTCAGCTCCTGGACATCATGGTCACCGTGCTGCTGTACATGATGGAGAGCTGCCTCATCAAAAGTGAGCTGCAAG
Seq C2 exon
ATGAAGAGAACAGTTTACATGTGGTGGTGAACTGTGGAGAAGCCTTACTGAAGAATAACACCTACTGGCCTCTTGTTAGTGACTTTATTAATATTCTTTCTCACCAAAGTGTGGCGAAGAGGTTTTTGGAGGATCATGGCTTGTTAGTTACGTGGATGAACTTTGTTTCTTTCTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008616-'13-16,'13-13,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0065015=CRAL_TRIO=PU(3.4=9.1)
A:
PF0065015=CRAL_TRIO=PU(63.1=84.4)
C2:
PF0065015=CRAL_TRIO=PD(35.9=60.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGACAATAAAGTATGAATTCCCCC
R:
AAAGAAAGAAACAAAGTTCATCCACG
Band lengths:
252-481
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]