BtaINT0163642 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017365 | ZBTB47
Description
zinc finger and BTB domain containing 47 [Source:HGNC Symbol;Acc:HGNC:26955]
Coordinates
chr22:15432333-15434322:+
Coord C1 exon
chr22:15432333-15432548
Coord A exon
chr22:15432549-15434174
Coord C2 exon
chr22:15434175-15434322
Length
1626 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
AAAGTCTTTTCATTCCACAGTGT
3' ss Score
7.52
Exon sequences
Seq C1 exon
GCTGCTGATGGGCTGGGGGCAAAGGTGAAGCTGGAGGAGAAACAGCACCATCCATGCCAGAAGTGCCCGCGCGTTTTCAACAACCGTTGGTACCTGGAGAAGCACATGAATGTGACCCACAGCCGCATGCAGATCTGCGACCAGTGCGGCAAGCGCTTCCTGCTAGAGAGCGAGCTGCTGCTGCACCGGCAGACAGACTGCGAACGCAACATCCAG
Seq A exon
GTGGGCCTCCAAGGGGCCTGCAGGGGGCAGCCATCCAGGCTGAGCCAGGCCGGAACTGGGCCCTGGGCACCCAGTGTCCTGCTGCCTGTGTTGTCTGCACAGTCTGCAGAGAGCAGGCTCAGCCCCCACCCCCCAACCCCGCCCCAGGGACAGTGGGACCAGCCCCAGCCCAAGGGTGAGCCCAGAGTGGTGAGAGCTCAGGGGATGACGTCAGGGAGAGCTTCCTGGAGGAGGCAGATAGAGCTGGGCTTCCGCAAGAGTGCAGAAAGGATTGGAACAAACAGGACCCTTGCCAGAGAGGCAGAGGGGAGCAGGGACTCAGGAGAATGAGAGGAGAGAGTTGTCTGAGCATGTGAGGCTGGGGGACAGCCAGCTCTGAGGAGGGATGAGTCAGTGTTTTTGGACTGCTGCAAGGCCAGCAGGGCCCCCAGGTATATAGTTTGGTAGATTGAGCAGTGCAGGAAAGCACAGAGGGGAGGAGGGGTTTTCCCGGAAGGGGGCGCCATTTTCCACTTATTGCAAGGGCTGAGTGGAGCAAGGGGCAGCCAGGCGGGAGGAAACCCCTGCATTCAGCTCTTTGGAGGTACCAGCTGGCCTGGGCATGGGGAAGAGGGACTGGATGAGCAGTTCGGGAAGTGCAGGGGGCCCAACAGGAAGGCTGCTGGGGCCAAACAGGGGATCTGGGCTGACTGCCAAGCATTGAGCCAGCCTGCATCTGGGCCAGCCTGGCCTTTCAGGGTGAAGACGGCACAAGGCCAGCCAAGTGATTTTTTGCCTTCTCTGGCTGAGAGTGAGGTTGAGGGGCAGTAGGTAGGCGATGCTAATTGCCTGAACTAATTGCTAATTGGAGAAAGTGTTACCTGAGGGTTACCTGGATTCCTGCCCCACCCTCAGGCACATGCTCCCACCTGCCTGCCTGCTGGCCTGCCCTGTGACTCTCCACATGCACACCCCCGAGCTTCCCTCCTGAAAGGGAAAGACGCTTGTACTTCTACCCTGGGTACCCTGACCCAATTTCTGCCTAAGCCCTGGCCTACTGCAGGGGTAAGGGCCCAGGAGACGAGGAGGAGGGGAGTGTGGTCCCCAGGGTTCCCACTACCATCTCGTGTCCAAAAGGCCCTTGCACCTCCTGCAGTCCCCCAGCCCTTTGGAACCTGTTCCCTTGGGGATCTATCTCTGTGGTGTCAAGGTATGGGCCCCAGCAGGGGAGGCAGCAGAAATAATGTCTCAGCTTTGCCAGAACTTGTTATCCGAGGGGCTCCCCCTTGAACTGTAGCCTCCTCACCCACTGTGGCCCTTCAGCCAGTTATGTGTCTCTCCTCTGTAGAAAGATGTCTTGTTGAAATGAGCACAGAGGAGGGACTTCGTGGAAGAGGTGGCCCATGACCCTAGTGAGTTCAGGATGAGGAGGGAGGGCCCCAGGCTGCAACCCTGGGCGGGTGGGCAGGTGGGTAACATTAGGGATTTACCACCCCTGACTCAGAATATCAAACGTAGCTGGTCCTTGGCCACCAAGATCTCTCTCTCGAGCACAGTTCAGGTGGGGAAACTGAGGCCTAGAGAGGCAGTGACTTGTCCTAGGTCACATGGTCCTGACCCAGGGCCTAAAGTCTTTTCATTCCACAG
Seq C2 exon
TGTGTGACATGTGGCAAAGCTTTTAAGAAGCTCTGGTCCCTCCACGAGCACAATAAAATTGTGCACGGCTACGCAGAAAAGAAGTTCTCCTGTGAAATTTGTGAGAAGAAGTTCTACACCATGGCTCACGTGCGCAAGCATATGGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017365:ENSBTAT00000023089:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.153 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF041477=Nop14=PD(0.6=1.4),PF077676=Nop53=PD(15.3=30.6),PF0334410=Daxx=FE(35.7=100),PF138941=zf-C2H2_4=WD(100=33.3)
A:
NA
C2:
PF0334410=Daxx=PD(3.5=14.0),PF134651=zf-H2C2_2=PU(26.9=14.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGGCTGGGGGCAAAG
R:
CACGTGAGCCATGGTGTAGAA
Band lengths:
342-1968
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]