HsaINT0184663 @ hg38
Intron Retention
Gene
ENSG00000114853 | ZBTB47
Description
zinc finger and BTB domain containing 47 [Source:HGNC Symbol;Acc:HGNC:26955]
Coordinates
chr3:42658275-42661632:+
Coord C1 exon
chr3:42658275-42659828
Coord A exon
chr3:42659829-42661484
Coord C2 exon
chr3:42661485-42661632
Length
1656 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CAAGTCCTCTTATTCTGCAGTGT
3' ss Score
6.88
Exon sequences
Seq C1 exon
TTGCTGGTTGAGAAGACAACTGACTCCCCGGCGGCTGAGTTCTCGCTGGTGGAGGACGTGGCGCTGCACTTTGCCTGCTTGATGGGCCGCCTGAACGAGCAGCGCCTCTTCCAGCCTGACCTCTGCGACGTGGACTTGGTGCTGGTGCCCCAGCGCAGCGTCTTTCCGGCACACAAGGGTGTGCTAGCCGCCTACAGCCAGTTCTTCCACTCACTCTTCACCCAGAACAAGCAGCTGCAGCGTGTGGAGCTGTCCCTGGAGGCACTGGCACCTGGTGGCCTGCAGCAGATCCTCAACTTCATCTATACGTCCAAGCTGCTGGTCAACGCGGCCAACGTCCACGAGGTGCTCAGCGCCGCCTCATTGCTGCAGATGGCTGACATCGCTGCGTCCTGCCAAGAGCTGCTGGACGCCCGCTCTCTAGGCCCACCAGGTCCGGGCACTGTGGCCCTGGCCCAGCCGGCTGCCAGCTGCACTCCAGCTGCGCCGCCCTACTACTGTGACATCAAGCAGGAGGCCGACACCCCAGGCCTGCCCAAGATCTATGCCCGCGAGGGCCCTGACCCTTACTCGGTGCGTGTTGAGGACGGGGCAGGGACTGCTGGTGGCACAGTGCCTGCCACCATTGGGCCAGCCCAGCCCTTCTTTAAGGAGGAGAAGGAGGGTGGTGTCGAGGAGGCCGGTGGGCCCCCAGCCAGCTTGTGCAAGCTGGAGGGTGGAGAAGAGTTGGAGGAAGAGCTTGGGGGTTCTGGCACCTACAGCCGCAGGGAGCAATCCCAGATCATCGTGGAGGTGAACCTCAACAACCAGACACTGCACGTGTCCACGGGGCCAGAGGGGAAGCCAGGTGCCGGGCCAAGCCCAGCCACCGTGGTTCTGGGCCGGGAGGACGGGCTGCAGAGACACTCGGACGAGGAGGAGGAGGACGACGAGGAGGAGGAGGAGGAAGAAGAGGAAGAGGAAGGTGGTGGCAGTGGACGGGAGGAGGAGGAGGAGGAAGAGGGTGGCAGTCAGGGAGAAGAGGAAGAAGAGGAGGAGGACGGGCACAGTGAGCAGGAAGAGGAAGAGGAGGAGGAAGAGGAGGAAGGGCCTAGTGAGCAGGATCAAGAGAGCTCTGAGGAGGAGGAGGGGGAGGAGGGGGAGGCTGGGGGCAAGCAGGGGCCACGGGGAAGCCGAAGCAGCCGGGCAGACCCCCCTCCCCACAGTCACATGGCCACACGGTCCCGGGAGAACGCCCGGCGCCGGGGTACCCCTGAACCTGAAGAAGCTGGGCGGCGGGGTGGGAAGAGGCCAAAGCCACCCCCTGGAGTGGCCTCTGCATCGGCCCGAGGGCCGCCAGCCACTGATGGGCTGGGGGCCAAGGTGAAGCTGGAGGAGAAGCAGCACCATCCATGCCAGAAGTGCCCACGAGTTTTCAACAACCGCTGGTACCTGGAGAAACACATGAATGTGACCCACAGCCGCATGCAGATCTGCGACCAGTGCGGCAAGCGCTTCCTGCTGGAGAGCGAGCTGCTGCTGCACAGGCAGACAGACTGCGAGCGCAACATCCAG
Seq A exon
GTGGGCCTCACGTGGCTGGGGGCAGGGCAGAGGCTGTCCAGGTGGGGCTAGGCCATAACTGGGCTCTGGGCACCTAGTGTCTTGCTGACTGCATTACCTAGGTGGTCTGCGGAGACCAGACTTAGCCCCCAGACAGGCTGGCCCAGGCCCAGTTCTCAGGGTGGTTAGAGCTCAGGGGTAACATCAAGCCGAGCTTCCTGGGAGAGGTGGATAGAGTTGGGCGCATGAAGAGATGTGCAGAGGATTGGAACAAACAGTACCCTTGGCCAGAGGGACAAAGGGGACACATGGACTTGGGAGGATGAGAGTGGAGAGTTGTCTGAGCAGACAAGGCCAGAAGACAGGCCACTCTGGGTGGGATGAGTCAGACGGGGTTTTAACAAACACGGGGGCTGTAGGAAGGCCAGCAGGGCCACTGTGTATAGTTTCACAGGTTGTGCACTGCAGCAAGTGAGCACACGATGGGAGGAGGGGTTTGCCCAGAGGGATGCCATCCTCCACTTCCCACAAAAGTGCTGTATGGAGGAGGGGGCAGCCCAGCAGGAGGCAGCCCCCACTTTCAGCTCTTTGGGGATGCCAGCTCCCATGGGCCTGGGAAAAAGGGATTGGGTGAGAAATTTGGGAAGAGCAGAGGCTGCTGGGGTAAGCAGGGGAGCTGAGCTGGCTGCTGGGCCTTGAGCCAGCCTGAGTCTGTTTGTGCCAGCCTCACTTCTCAGGGTGGGGTGGCACAGGGCCAGCCAGGCTCCCACGGGTGGTTTTCACCTCTTCTGGCCCAGGAGAAGGGGGAAAGGTAGCAGGTAGGTGGGTGCTAATTGCCTGCGCTAATTGCTAATTGCAGTGCCCTGTGGAGAAAGTGTTACCCGGGGGTCACCTGCTATCCTGCCCCACCCTTGTGTACCTGTGCCCACTTGCCCGCCTGCTGGGCTGCCCTTTGATGCTCTAACTGCTGCGCACCTGAGTCTCCCTCCTGAAGGAAAAAGAAGCTTCTGCCCCATCCAACCTGAGTACCCTGACCAATTTCTGCCCAAGCCTTGGCCTAGCCTCCATCCCTGTGGGGTGTCCTGCATAGATGGGCAGGACAAGGGTCCAGGAGAACAAATGGGGGGATATGGTCCCCAAGATCCCCCACCACTCTCTGTGCCTGATGGGACCTTGAGCCTCCTGCTGTCCTCCTCAGCCAACGCCTCTGGGACTCATCCTCTTGGCGATATTCATGGTGTCATGGCACAGGTCCCAGCAGGAGGAGGCAGCAGTGATAATGGCTCACTCTGTGGGACCTGTTATCTCTGCGTGTAGCCTCCATACCAGAGGGCGCCCTTCAGCTAGTTGTCTGCCTTACCTCTATAGACAGACAAAGGGTGATGCCTTTGGAAGCCCTTGTTGAAATGAGCCCAGAGTGGGGAATTTCCTGGAAGAGGTGACCCCTGACCCTAGTTAACTCAAGGATGAAGGAGGACACCAGGCTGTGTGTTTGGGGGTGTTTAAGGAGTTTTCATCCCCAACCTTAGAAACATCAGAGCTGGCTGGCTGTTGGCATCAAGGGCTCTCCAGCATATTTCAAGTGGGAAAACTGAGGCCAGACGGGGGCAGTAGCTTGCCCAAGTCCAAGACCCTGGGGACTCAGGACCCAGGGCCTCAAGTCCTCTTATTCTGCAG
Seq C2 exon
TGTGTGACATGTGGCAAAGCTTTCAAGAAGCTTTGGTCCCTCCATGAGCATAACAAGATTGTGCACGGCTACGCAGAGAAGAAGTTCTCATGCGAGATCTGTGAGAAGAAGTTCTACACCATGGCCCACGTGCGTAAGCACATGGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114853:ENST00000232974:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.570 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0065126=BTB=WD(100=22.4),PF155111=CENP-T=WD(100=53.6),PF138941=zf-C2H2_4=WD(100=4.9)
A:
NA
C2:
PF134651=zf-H2C2_2=PU(26.9=14.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCTGAACCTGAAGAAGCT
R:
TGGAGGGACCAAAGCTTCTTG
Band lengths:
350-2006
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains