HsaINT0184663 @ hg19
Intron Retention
Gene
ENSG00000114853 | ZBTB47
Description
zinc finger and BTB domain containing 47 [Source:HGNC Symbol;Acc:26955]
Coordinates
chr3:42699767-42703124:+
Coord C1 exon
chr3:42699767-42701320
Coord A exon
chr3:42701321-42702976
Coord C2 exon
chr3:42702977-42703124
Length
1656 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CAAGTCCTCTTATTCTGCAGTGT
3' ss Score
6.88
Exon sequences
Seq C1 exon
TTGCTGGTTGAGAAGACAACTGACTCCCCGGCGGCTGAGTTCTCGCTGGTGGAGGACGTGGCGCTGCACTTTGCCTGCTTGATGGGCCGCCTGAACGAGCAGCGCCTCTTCCAGCCTGACCTCTGCGACGTGGACTTGGTGCTGGTGCCCCAGCGCAGCGTCTTTCCGGCACACAAGGGTGTGCTAGCCGCCTACAGCCAGTTCTTCCACTCACTCTTCACCCAGAACAAGCAGCTGCAGCGTGTGGAGCTGTCCCTGGAGGCACTGGCACCTGGTGGCCTGCAGCAGATCCTCAACTTCATCTATACGTCCAAGCTGCTGGTCAACGCGGCCAACGTCCACGAGGTGCTCAGCGCCGCCTCATTGCTGCAGATGGCTGACATCGCTGCGTCCTGCCAAGAGCTGCTGGACGCCCGCTCTCTAGGCCCACCAGGTCCGGGCACTGTGGCCCTGGCCCAGCCGGCTGCCAGCTGCACTCCAGCTGCGCCGCCCTACTACTGTGACATCAAGCAGGAGGCCGACACCCCAGGCCTGCCCAAGATCTATGCCCGCGAGGGCCCTGACCCTTACTCGGTGCGTGTTGAGGACGGGGCAGGGACTGCTGGTGGCACAGTGCCTGCCACCATTGGGCCAGCCCAGCCCTTCTTTAAGGAGGAGAAGGAGGGTGGTGTCGAGGAGGCCGGTGGGCCCCCAGCCAGCTTGTGCAAGCTGGAGGGTGGAGAAGAGTTGGAGGAAGAGCTTGGGGGTTCTGGCACCTACAGCCGCAGGGAGCAATCCCAGATCATCGTGGAGGTGAACCTCAACAACCAGACACTGCACGTGTCCACGGGGCCAGAGGGGAAGCCAGGTGCCGGGCCAAGCCCAGCCACCGTGGTTCTGGGCCGGGAGGACGGGCTGCAGAGACACTCGGACGAGGAGGAGGAGGACGACGAGGAGGAGGAGGAGGAAGAAGAGGAAGAGGAAGGTGGTGGCAGTGGACGGGAGGAGGAGGAGGAGGAAGAGGGTGGCAGTCAGGGAGAAGAGGAAGAAGAGGAGGAGGACGGGCACAGTGAGCAGGAAGAGGAAGAGGAGGAGGAAGAGGAGGAAGGGCCTAGTGAGCAGGATCAAGAGAGCTCTGAGGAGGAGGAGGGGGAGGAGGGGGAGGCTGGGGGCAAGCAGGGGCCACGGGGAAGCCGAAGCAGCCGGGCAGACCCCCCTCCCCACAGTCACATGGCCACACGGTCCCGGGAGAACGCCCGGCGCCGGGGTACCCCTGAACCTGAAGAAGCTGGGCGGCGGGGTGGGAAGAGGCCAAAGCCACCCCCTGGAGTGGCCTCTGCATCGGCCCGAGGGCCGCCAGCCACTGATGGGCTGGGGGCCAAGGTGAAGCTGGAGGAGAAGCAGCACCATCCATGCCAGAAGTGCCCACGAGTTTTCAACAACCGCTGGTACCTGGAGAAACACATGAATGTGACCCACAGCCGCATGCAGATCTGCGACCAGTGCGGCAAGCGCTTCCTGCTGGAGAGCGAGCTGCTGCTGCACAGGCAGACAGACTGCGAGCGCAACATCCAG
Seq A exon
GTGGGCCTCACGTGGCTGGGGGCAGGGCAGAGGCTGTCCAGGTGGGGCTAGGCCATAACTGGGCTCTGGGCACCTAGTGTCTTGCTGACTGCATTACCTAGGTGGTCTGCGGAGACCAGACTTAGCCCCCAGACAGGCTGGCCCAGGCCCAGTTCTCAGGGTGGTTAGAGCTCAGGGGTAACATCAAGCCGAGCTTCCTGGGAGAGGTGGATAGAGTTGGGCGCATGAAGAGATGTGCAGAGGATTGGAACAAACAGTACCCTTGGCCAGAGGGACAAAGGGGACACATGGACTTGGGAGGATGAGAGTGGAGAGTTGTCTGAGCAGACAAGGCCAGAAGACAGGCCACTCTGGGTGGGATGAGTCAGACGGGGTTTTAACAAACACGGGGGCTGTAGGAAGGCCAGCAGGGCCACTGTGTATAGTTTCACAGGTTGTGCACTGCAGCAAGTGAGCACACGATGGGAGGAGGGGTTTGCCCAGAGGGATGCCATCCTCCACTTCCCACAAAAGTGCTGTATGGAGGAGGGGGCAGCCCAGCAGGAGGCAGCCCCCACTTTCAGCTCTTTGGGGATGCCAGCTCCCATGGGCCTGGGAAAAAGGGATTGGGTGAGAAATTTGGGAAGAGCAGAGGCTGCTGGGGTAAGCAGGGGAGCTGAGCTGGCTGCTGGGCCTTGAGCCAGCCTGAGTCTGTTTGTGCCAGCCTCACTTCTCAGGGTGGGGTGGCACAGGGCCAGCCAGGCTCCCACGGGTGGTTTTCACCTCTTCTGGCCCAGGAGAAGGGGGAAAGGTAGCAGGTAGGTGGGTGCTAATTGCCTGCGCTAATTGCTAATTGCAGTGCCCTGTGGAGAAAGTGTTACCCGGGGGTCACCTGCTATCCTGCCCCACCCTTGTGTACCTGTGCCCACTTGCCCGCCTGCTGGGCTGCCCTTTGATGCTCTAACTGCTGCGCACCTGAGTCTCCCTCCTGAAGGAAAAAGAAGCTTCTGCCCCATCCAACCTGAGTACCCTGACCAATTTCTGCCCAAGCCTTGGCCTAGCCTCCATCCCTGTGGGGTGTCCTGCATAGATGGGCAGGACAAGGGTCCAGGAGAACAAATGGGGGGATATGGTCCCCAAGATCCCCCACCACTCTCTGTGCCTGATGGGACCTTGAGCCTCCTGCTGTCCTCCTCAGCCAACGCCTCTGGGACTCATCCTCTTGGCGATATTCATGGTGTCATGGCACAGGTCCCAGCAGGAGGAGGCAGCAGTGATAATGGCTCACTCTGTGGGACCTGTTATCTCTGCGTGTAGCCTCCATACCAGAGGGCGCCCTTCAGCTAGTTGTCTGCCTTACCTCTATAGACAGACAAAGGGTGATGCCTTTGGAAGCCCTTGTTGAAATGAGCCCAGAGTGGGGAATTTCCTGGAAGAGGTGACCCCTGACCCTAGTTAACTCAAGGATGAAGGAGGACACCAGGCTGTGTGTTTGGGGGTGTTTAAGGAGTTTTCATCCCCAACCTTAGAAACATCAGAGCTGGCTGGCTGTTGGCATCAAGGGCTCTCCAGCATATTTCAAGTGGGAAAACTGAGGCCAGACGGGGGCAGTAGCTTGCCCAAGTCCAAGACCCTGGGGACTCAGGACCCAGGGCCTCAAGTCCTCTTATTCTGCAG
Seq C2 exon
TGTGTGACATGTGGCAAAGCTTTCAAGAAGCTTTGGTCCCTCCATGAGCATAACAAGATTGTGCACGGCTACGCAGAGAAGAAGTTCTCATGCGAGATCTGTGAGAAGAAGTTCTACACCATGGCCCACGTGCGTAAGCACATGGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114853-ZBTB47:NM_145166:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.563 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0065126=BTB=WD(100=22.4),PF155111=CENP-T=WD(100=53.6),PF138941=zf-C2H2_4=WD(100=4.9),PF0009621=zf-C2H2=PU(4.2=0.2)
A:
NA
C2:
PF0009621=zf-C2H2=PD(87.5=42.0),PF134651=zf-H2C2_2=PU(26.9=14.0),PF0013017=C1_1=PU(6.0=6.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCTGAACCTGAAGAAGCT
R:
TGGAGGGACCAAAGCTTCTTG
Band lengths:
350-2006
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)