Special

MmuINT0179648 @ mm9

Intron Retention

Gene
ENSMUSG00000013419 | Zfp651
Description
zinc finger protein 651 [Source:MGI Symbol;Acc:MGI:2670992]
Coordinates
chr9:121671737-121674748:+
Coord C1 exon
chr9:121671737-121673239
Coord A exon
chr9:121673240-121674600
Coord C2 exon
chr9:121674601-121674748
Length
1361 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GCCCTTCCTTTTCCCCGTAGTGC
3' ss Score
10.87
Exon sequences
Seq C1 exon
TTGCTGGTTGAGAAGACGACAGACTCCCCGGCGGCAGAGTTCTCGCTGGTGGAGGACGTGGCCCTGCACTTCGCCTGCTTGATGGGCCGCCTCAATGAGCAGCGCCTCTTCCAGCCAGACCTGTGCGATGTGGACCTAGTGCTGGTGCCTCAGCATAGCGTGTTCCCCGCACACAAGGGTGTGCTGGCCGCCTACAGCCAGTTCTTCCACTCGCTCTTCACACAGAACAAGCAGCTGCAGCGGGTCGAGCTATCTCTGGAGGCACTCGCGCCCAGCGGCCTGCAGCAGATCCTCAACTTCATCTACACGTCCAAGCTGCTCGTGAACGCGGCCAACGTGCACGAGGTGCTCAGCGCGGCCTCGCTGCTGCAGATGGCTGACATCGCGGCCTCCTGCCAGGAGCTGCTGGACGCTCGATCCTTGGCGCCCTCGGGCCCTGTGGCCCTGGCACAGCCTGCCACCAGCTGTGCTCCGGTGCCTCCACCACCCTACTACTGTGACATCAAGCAGGAGGCAGATGCCCCAGGCCTCCCAAAGATCTATGCCCGGGAGGGCCCCGATCCCTACTCTGTGCGTGTGGAGGATGGAGCAGGGGCTGCTGGGGATGTAGGCTCTGCCACTGCTGGGCCAGCACAGACACTCTTCAAGGAGGAGAAGGAAGGGGCCCCTGAAGAGGCAGAGGCCCCAGGTAGCCTGTGCAAACTGGAAAGTGGAGAGGGGCTGGAGCCAGAACTGGATGCCTCGGGCACCTATGGGCACCAGGAGCAGTCACAAATCATTGTTGAGGTGAACCTTAACAACCAAACACTGCATGTGTCCACCGGACCCGAGGGCAAGCCAGGCTCTGGTGCCAATCCAGCCACTGTGGTGCTCGGCCAGGAGGATGGCATGCAGGGACACTCGGAAGAAGAGGAGGAGGAAGGAGGAGGGAGTGGAGGGGGAGAGGAAGAGGAGGAAGAGGAAGAAGAAGAGGAAGGCAGCCAGGGAGAGGAGGAGGAGGAAGAGGAGGAAGGGCCCAGCGATCATCGAGAGGATGAGGATGAAGAAGATGGGCCCAGTGAGCAGGATGCAGAGAGTTCTGAGGAGGAGAGGGAGGCTGAGGGCAGGCAGGACCCCGCAGGTCCCGCTGGGTGTCAGGGCAGCCAGGTGGACCCTCCACCACATAGCCGAATGTCCACACGGTCCCGGGGACAGAACACCCGGCGCCGGGCCACCCCTGAGCCAGAGGAGGCTGGACGTAGAGGTGGGAAGAGGCCCAAGGCCTCTGGAGCTGTTCCGGCATCCCAGGCAGCTGACGGGCTGGGGGCCAAGGTGAAGCTGGAGGAAAAACAGCAGCATCCGTGCCAGAAGTGCCCTCGGGTCTTCAACAACCGCTGGTACCTAGAAAAGCATATGAACGTGACCCACAGCCGGATGCAGATCTGTGGCCAGTGTGGGAAGCGCTTCCTGCTGGAGAGTGAGCTGCAGCTGCACAGACAGACGGACTGTGAGCGCAACATCCAG
Seq A exon
GTGAGACATGCTGCCCAGACAGCCCCCAGGAGGAGACAGGTGGAGCTGGGCTCTGGCCCACAGAGTTGTGAGCAGAGGATTGTGGCAGCACCTTTCCCAGAAGAGCAAGAGCAACAGGGATGTGGGGGAGAGCGGAGTTATCTGAAGCCCGGGGCAGTAGGAACTGCCGAGGGATGTGTCTTTTAACAAATCTAGGCCGGCAGAGAAATGAAGGGGCTTATCTGGAGAGGGCATCACCCTTTGCCCACCCCAGAGCCACCGTGCAGAGCAATAGATAGCCAATCAAGAGGGATCTTGGGTTCAACTCTGGCATGCCAGCTACTCTGAATCTGGAGGAAAAAGGCTAGATGAGGAATTTGGAAAGAAATGGGAGTGGGGGAAGGCTGGAGTGGCTGCCAGGTCTTGGGCCAGTCTGCACTGTCTGAGCACACTCCAGCATGTGCAGTGTGTGCACACACCCACACACCAGCATTCATAATCACCAGCACGTGTGTACACACCAGTATGTGTGCACACACACCAGCATACATGCACACACACCAACATGCATGTACATATACATACACATCAGCATTCGTGCACACACACCAGCATGCGTATAGACACACATATACATCAGCATTTGTGCACATACACACCAACATGCATGTACACATACCACACGCACACACCAACATGCATGTACACATACATACACATCAGCATTCATACACACACACACCAGCATGCCTTTCACCTTTTCTGACCCAAGAAGAAAAAAAGAAAACCTCAGGCCACGGGTAGGCGGGTGCTAATTGCCTGCACTAATTGCTAATTGGATGCCAGTGGGGAAGGTGTGCCTGGTGTCCTGCCCATCACCCACTCTGTGCACCTGTTTCCTGACCCTGGGCTGGCTGTCAGCTATTCCTGTACCTTAAGCCACCCCGAGTGTGCAAAACCTTTACTCCTTCCTGCCCAGACCCCAGCCTCTAGCCTCTGGAGCCCATGCTGGGATGTGCAGGGCAGGAGTCCAGGAGAGCAGCTTTCGGTCCAACTACCCTCCACTGCCTGAAGGACCTAAAGCCTCACAGCCTGTAGAACCTGCAGAACTGAAAGTTCCTACCTACCAGGCACAGCTGCCTTAACTAACTTGACCTACAGCCTCCTGCTGAGAGAAGCAGACAAAGGGGCGGTGCTTAGAAGAGGGATCCTGGAAGAGGTACCCCAACAGCCATGTGGGCAGGTGTGGAAGGAGTCAACCTAGTCTGGGAATGATCCAGCCTTCTTACCAGCACTCTTCAAGTGGAGGAACAGGCCTGCCCCAGAGAGAGGCCAAGGGTAACTCTGGGTTGCAGCCAAAGCGCCCTTCCTTTTCCCCGTAG
Seq C2 exon
TGCATGACATGTGGCAAAGCCTTCAAGAAACTGTGGTCTCTTCATGAGCACAACAAGATAGTGCACGGCTACGCGGAGAAGAAGTTCTCCTGTGAGATCTGCGAGAAGAAGTTTCACACCATGGCGCACGTGCGCAAGCACATGGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013419-Zfp651:NM_001166644:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.545 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0065126=BTB=WD(100=22.0),PF057937=TFIIF_alpha=WD(100=36.9),PF0334410=Daxx=PU(99.1=46.3),PF041477=Nop14=WD(100=29.1),PF138941=zf-C2H2_4=WD(100=4.8)

							
A:
NA

							
C2:
PF0334410=Daxx=PD(0.1=0.0),PF121713=zf-C2H2_jaz=WD(100=46.0)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000091286





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000091286f395A
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr3:42659829-42661484 
ALTERNATIVE
HsaINT0184663
(ZBTB47)
Human
(hg19)
chr3:42701321-42702976 
ALTERNATIVE
HsaINT0184663
(ZBTB47)
Rat
(rn6)
chr8:130402973-130404465 
LOW PSI
RnoINT0167013
(Zbtb47)
Cow
(bosTau6)
chr22:15432549-15434174 
LOW PSI
BtaINT0163642
(ZBTB47)
Chicken
(galGal4)
chr2:1987921-1991206 
ALTERNATIVE
GgaINT0093590
(ZBTB47)
Chicken
(galGal3)
chr2:1893094-1897184 
ALTERNATIVE
GgaINT0093590
(ZBTB47)
Zebrafish
(danRer10)
chr24:20452307-20455251 
ALTERNATIVE
DreINT0177289
(zbtb47b)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GGACGTAGAGGTGGGAAGAGG

				
R: 
CGTAGCCGTGCACTATCTTGT

				
Band lengths: 
343-1704

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"