RnoINT0167013 @ rn6
Intron Retention
Gene
ENSRNOG00000019382 | Zbtb47
Description
zinc finger and BTB domain containing 47 [Source:RGD Symbol;Acc:1562434]
Coordinates
chr8:130401470-130404613:+
Coord C1 exon
chr8:130401470-130402972
Coord A exon
chr8:130402973-130404465
Coord C2 exon
chr8:130404466-130404613
Length
1493 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCGCTCTAATTTTCCCGTAGTGC
3' ss Score
7.37
Exon sequences
Seq C1 exon
TTGCTGGTTGAGAAGACCACAGACTCCCCGGCGGCAGAGTTCTCGCTGGTGGAGGACGTGGCCCTGCACTTCGCCTGCTTGATGGGCCGTCTCAATGAGCAGCGCCTCTTCCAGCCAGACCTGTGCGATGTGGACCTAGTGCTGGTGCCTCAGCATAGCGTGTTCCCTGCACACAAGGGTGTGCTGGCCGCCTACAGCCAGTTCTTCCACTCGCTCTTCACTCAGAACAAGCAACTGCAGCGGGTCGAGCTGTCCCTGGAGGCGCTGGCGCCCAGCGGCCTGCAGCAGATCCTGAACTTCATCTACACGTCCAAACTGCTGGTGAACGCGGCCAACGTGCACGAGGTGCTCAGCGCGGCCTCGCTGCTGCAGATGGCTGACATTGCCGCCTCCTGCCAGGAGCTGCTGGACGCTCGGTCCCTGGCGCCCTCGGGCCCCGTGGCCCTGGCCCAGCCAGCCGCCAGCTGTGCCCCGGTGCCTCCACCACCCTACTACTGTGACATCAAGCAGGAGGCAGACACCCCAGGCCTCCCCAAGATCTACGCCCGTGAGGGCCCTGACCCGTACTCTGTGCGTGTGGAGGATGGAGCGGGGGCAGCTGGAGATGTGGGCTCTGCCGCTGCGGGGCCGGCACAGACGCTCTTCAAGGAGGAGAAGGAAGGGACGCCTGAAGAGGCCGAGGCCCCGGGAGGTAGCCTGTGCAAACTGGAGAGTGGAGAGGGGCTGGAGCCAGAACTGGATGCCTCAGGCACCTATGGGCACCAGGAGCAGTCACAGATCATTGTGGAGGTGAACCTTAATAACCAAACACTGCATGTGTCCACCGGGCCTGAGGGCAAACCAGGCCCCGGGGCCAACCCAGCCACTGTGGTGCTGGGCCAGGAGGACCGGATGCAGGGACACTCGGAAGAAGAGGAGGAGGAGGAAGGAGGAGGGAGTGGAGGAGGTGAGGAAGAGGAAGAAGAGGAGGAGGAAGAGGGAGGCAGCCAGGGAGAGGAGGAAGAGGAGGAGGAAGGGCCCAGCGACCGGGAGGACGAAGATGAAGAGGATGGGCCCAGTGAGCAGGATGCGGAGAGTTCTGAGGAGGAGAGGGTGGCCGAGGGCAGGCAGGACCCTGCAGGTCCCGCTGGGTGTCAGGGCAGCCAGGCGGACCCTCCACCGCACAGCCGGATGTCCACGCGGTCCCGGGGACAGAACTCCCGGCGCAGAGCCACCCCCGAGCCAGAGGAGGCTGGAGGTAGAGGTGGGAAGAGGCCCAAGGCGTCTGGAGCTGTTGCAGCACCCCAGGCAGCTGACGGGCTGGGGGCCAAGGTGAAGCTGGAGGAGAAACAGCAGCATCCGTGTCAGAAGTGCCCTCGGGTCTTCAACAACCGCTGGTACCTAGAGAAGCATATGAACGTGACCCACAGCCGCATGCAGATCTGTGGCCAGTGTGGGAAGCGCTTCCTGCTGGAGAGCGAGCTGCAGCTGCACAGGCAGACCGACTGTGAACGCAACATTCAG
Seq A exon
GTGAGCCGTGCTGCCCGTGCTGCCCGGACAGTCCCATGGTGGTGAGTCACACTGGCTGCCCGGGGGAGGCCAGAGAGCTGTGCTCTGGCCCACAGTTGTGGGCAGAGGATGGTGGCAGCACCTTTCCCAGAGGAGCAAGAGCAGCTGGATGTGGGGGAGATGGAGAGTTACCCGAAGCTAGGGGGCGGTAGGAACTGCCCGGGGGTGTGTCTTTTAACAAACCTAGGGCCGCAGAGCTGCCTGTGCGGTTACAGTTACGCAGGTTGTATGCTACCCCCAAGTCTGCATAGAAGGGAAGGGGCTTGTCTGGAAAGGGCATCACCCCTGCACACCTCTGAACCACTGTACAGAGCAGTACATAGCCAATCAAGAGGACTCCTGCGTTCAACTCTGGAGTGCCAGCTATCCTGAGTCTGGAGGGAAGAAAAAGGCTGGATGAGGAAAGAACTGGCAGTGGGGGGAGGCTGGGGTGGCTGCCAGGCCTTCCATACACACACCCCAGCATGTCTGTGTGTTTGTGTGCACACATACACACACACCCCAGCATGTGTGTACACACACACATCATGCATACACCAGCATGGACATACACACATGTCAGCATTTGTGCACACACACCAGCATGCATGTACACACACATACACATCATGCACACACACACACACCAGCATGTGTGTATACATACACAGCAGTATTCATGTGCACACATACCAACATGCATGTACATACACACGCACACACACCAGCATGCATCTACACATAATAGCATTTGTGCACACAGACTAGCATATGTGCACATATACACATCAGCATTCGTGTACATACACACTAGCATGCCTTTCTCCTTTTCTGGCACAACAAGGGGGAGAAAAAAAAACAAAAACCCAGACCCCAGGTAGGCGGGTGCTAATTGCCTGCACTAATTGCTAATTGGATGCCAGTGGGGAAGGTGTGCCTGGTAACCTGCCCATCACCCACTGTGCACCTGTTTCCTGCCCCAGGCTGCCTGTCAGCTATTCCTGCACCTTAAGCCATACCAAGTGGGCGAAACCTTTACTCTTTCCTGCCCAGACCCCAGCCTGGAGCCCCTGCTGGGATGAGCAGGGCCGGAGTCCAGGAAAGCTGCTTCCAGTCCACCTGCCTCCACTGTCTGAGGGAGGCCTAGAGCCTCTGCAGACTGTAGAACCTGCACTGACGGGGAACCGAAAGGTCCGCTCACCACCTAGCACATCTGCCATAACTAATGTGGCCTACAGCCTCCTGCCTCAGAGAAGCAGACAAAGCCAGGGGGTGGGGGAGGCCTTAGAAGGGGGTCCCAGAAGAGGTACCCCAACAGCAAAGTGGGAGTGTGTGTGTGTGTAAGGAGTCAAGCTAGGCTGGGAACGTCAGATCCAGCCTTCTTACCAGCATTCTTCAGGTGGAGAAGCAGGCCTGCCCCAGTCAGGCCAAGGCTAGCTCCAGGTTGCAGCCAAAGCGCTCTAATTTTCCCGTAG
Seq C2 exon
TGCATGACGTGTGGCAAAGCCTTCAAGAAGCTGTGGTCTCTTCACGAACACAACAAGATAGTGCACGGCTACGCGGAGAAGAAGTTCTCCTGTGAGATCTGCGAGAAGAAGTTTCACACCATGGCGCATGTGCGCAAGCACATGGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019382:ENSRNOT00000043346:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.539 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0065126=BTB=WD(100=22.0),PF057937=TFIIF_alpha=WD(100=38.3),PF138941=zf-C2H2_4=WD(100=4.8)
A:
NA
C2:
PF134651=zf-H2C2_2=PU(26.9=14.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGAGGCTGGAGGTAGAG
R:
CGTAGCCGTGCACTATCTTGT
Band lengths:
354-1847
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]