DreINT0177289 @ danRer10
Intron Retention
Gene
ENSDARG00000079547 | zbtb47b
Description
zinc finger and BTB domain containing 47b [Source:ZFIN;Acc:ZDB-GENE-091118-34]
Coordinates
chr24:20452159-20455461:-
Coord C1 exon
chr24:20455252-20455461
Coord A exon
chr24:20452307-20455251
Coord C2 exon
chr24:20452159-20452306
Length
2945 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAC
5' ss Score
7.48
3' ss Seq
AGATTCTCTGATCTTTCTAGTGC
3' ss Score
6.06
Exon sequences
Seq C1 exon
GAGGGTCTGGGTCAGAAGGTGAAGCTTGAAGAAAAGCAGCACTTTTCTTGCAAAAAGTGCCCTCGTGTTTTTAACAACCGCTGGTATTTGGAGAAGCACATGAACGTCACTCACAACCGCATGCAGATCTGCAACAAATGTGGCAAGCGCTTTTTACTGGAGAGCGAGTTGCTGCTGCATCATCAGACTAACTGTGAGAAAAACATACAG
Seq A exon
GTATACACATCTGTCTGCATCCTCATGTTAACAAGGTAAACATGTAAAGTCAATTCAACACAAACTTTGGAGCAAAGTCAAAGTTTTTAAACTAGAAGCAAATCATAGAATTTAGTTAGACTCAGCCATTAAAAAAGGGAACGTAATAATGTTTAAATTTAGACACATAAAATGTGTAAATTGGAACACTCACTATTCATAAAGTTATCATTTCAAAATTAGCCCATTTAAACTACTTAATGAAACATTTTAGGAATGCCTATTCATTCATTCCCTAAAGGCTGGTTTATACTTCTGCATCAAGTGATTGGCGTGACCCCCTGCGGATGCCTTGCGCATTGTTGTGCATTTATACTTCTGCGTGCTGTTTGTGTTACTCTGCAATAACACTTCTGAAATGCTAGCTGGTAGGGGGTTTTTATGTTCTTTGTGACGAGTTTCTTTACTGGTGTTTTGTTTTTTCTGAATGCTTCCTGAATGTACAAGTGGCTCAAACTCGCTCATTTTAAGTTGGGAACCGGCGGTTGTGCAACAACTTTTATCATAAGGTAAACAAAAAACAGCAGTTTCTATCTGGAGCTATTTCACAGGAATCCACACTTATAAACACTCACTCCATTAGGTATGCCACCCACACTCGACAGCGCTACCAAGCCGACCAATCACAGAGCTTGCGATACGCATCATTGCAATGTGTAGTCACATTTTTGAGAGGTGCGTATCAGCGACGGCCATGGCGAGGGCTTTGCGACCATGCGTAGGCTGCGCTGGAGCACATGCATGTGCTTGACGCAGAAGTATAAATCAGCCTTTATTCATTAGGAGTCACCACAGCGGAATGAACCTCCAACAATTCTGGCATATGTTTTATGCAGCGGATGCCCTTTCAGCTGCAGCCCAGTACTGGGAAGTAATGCCTATTATTACAAACAAAATTTATGATGTTTGATTTTTTTTTATGTTGATATATACTATCTTTCATTTTGGGGTCAGTGATTTTTTTTTTTTTAAGAAAACAATACCTCAACCCAAGCTCATTCTGAAAACGTTTCTCTATGCCGCTAAGTACGCTTTTTCAAATCTCAAATTTCTTTTGCGAGTGCCATTCGCGCCTGCTGTTCTCTCCTAAATCCACCAGATGCCACTGTTGAATGACTGCTTGACTGAATGAATGACTGACTGACTAACTGACTGATTGATTGACCAACCCTCCTCCTTCCATAAACTCAACTAAGCATATTTTAAAAAGCACCGATCTGGAACCGTTCTTGACCATACTCGAACCCCTTCGCCATGGTAAACTTCTTTCTGCGTCTCAAGTCTACCAACGTACATGGCGAGCTAACTTCACAAACTGTTAACAGTGGAAAAGCCGTCCATATGAAGGTAAGCGGTCAGCTGGTAATCAAGAAAAGGATCGGCATCATACTGTCCAACAGCGTTCGTTTTAAAAATGAAATGCAGCCATATTTTCTTCTGGCTACATAATTTGCAATCTCCAGAAACATATATAGAGCTTTGTTTTCAGAATGAACCTATGTTGCAGTTCTCGTTAAATAAAACTATTAATCATTTTATCAGTAAAGGACATTTAAAATATTACTAAAGATATTTATTTTAAATATTTGCTGTTATTTTAAACAACTTTAGATTCTTTATAAAAAAAATCACTTAAAAAGTATCTTAGTTTCCTCAAAAATTATTAAGCTGTACAAATGTTTACACCTTATTAATAATGAGAAAACATATTAAGAACCATTTCTGATTGAGTTAATACAATAATTTTCAGAAGAATTTATTACATTTAAAAATATTTTTTAAATAGAAACTCATAATTTTTAATTGTAATGCTATTTTTGTGGTAAAGATCAAATAATTGCAGCATAAGAATAAATAAATATAAAATATTCAAATAAATCCAACATATTATACATTATACCCAAATTCTATTTTTCTAAATCATATTTTTACATTAATATGTTCAAGTTTAGGGTAGCACAATGGCTCAGTAGTTAGCACTGTCGCCTCACAGCAAGAAGGTTGCTGGTTTGAACCTCGGGTGGGCCAGTTGGCATTTCTGTGTGGTTTGCATGTTCTCCCGTTGTTCGTGTGGGTTTCCTCCAGGTGTTCTGGGTTTCCCCCAGTCTCCAAAGACATGCTCCATTGGTGAATTGAATAAAACTAAGTTGGCCGTGTAGTGTATGAGTGTGTATGGGTGTTTCCCTGTACTGGGTTGCAGCTGGAAGGGCATGCGCTGCCTAAAACATGTGCCGTAATAGTTGGTGTTTTATTCCGCTGTGGGGACCTCTGAAATAGAGACTAAGTTAAAGGAAAATGAATGAATATGCAAGATTAACCACTACTGGTAAATTTGTGTATAAACTTTACATAATTCTTAACATTTATTGATTATTTTTCATTACAAGAAAATGATCAACTTATCAGTTTGTTTGTGCAAAGCTAGTATTTTATACCAATAATAGAATGAACAACCCTAATTTACTATGTTTATAAGTGGAGTATGTGTTTTCTCTTCTGGTACTTTGCAATGAGTGCATACTGCACAGCAGAATGGTAGACCAGAGAGTCTGGATGATATATAGGCAGTCGGCGTGAAGAACAGCTGTTTTCTGCCACTAAAGCAGGTCTGCCAGGCCATTTTCACCTCTAACTTAAACTGGATCTAACCATCCAGTGCTCATTTGTCCCTGCTGTATGAAGCACTAACCAGGAATTGAGAGTAATTAAGGAAGTAGTGCTGTTGTGCTTAATTTGATATAAATGAATTTGAAGTTAGAGGTGCCTTTTGTGACATTCTTTCTTTATTTAGCTTGTGCAGTTCTTGGTTCTCTCTCAGAATGATAAAAATCCTTTGTTTTCCATCGACCCCTTAGGAAAGGCTGTTTAGTGTAATGCCGTTCATTCAGATTCTCTGATCTTTCTAG
Seq C2 exon
TGCGTGACTTGTGGAAAAGCTTTTAAAAAGCTGTGGTCTTTACACGAACACAACAAGATTGTCCATGGATACGCCGAGAAGAAGTTCTCTTGTGAAATCTGTGAAAAGAAGTTTTACACCATGGCACATGTCCGGAAACACATGGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079547:ENSDART00000141823:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.416 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=WD(100=34.3),PF0009621=zf-C2H2=PU(4.2=1.4)
A:
NA
C2:
PF0009621=zf-C2H2=PD(87.5=42.0),PF134651=zf-H2C2_2=PU(26.9=14.0),PF0013017=C1_1=PU(5.9=6.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]