MmuINT0179648 @ mm10
Intron Retention
Gene
ENSMUSG00000013419 | Zfp651
Description
zinc finger protein 651 [Source:MGI Symbol;Acc:MGI:2670992]
Coordinates
chr9:121762619-121765630:+
Coord C1 exon
chr9:121762619-121764121
Coord A exon
chr9:121764122-121765482
Coord C2 exon
chr9:121765483-121765630
Length
1361 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GCCCTTCCTTTTCCCCGTAGTGC
3' ss Score
10.87
Exon sequences
Seq C1 exon
TTGCTGGTTGAGAAGACGACAGACTCCCCGGCGGCAGAGTTCTCGCTGGTGGAGGACGTGGCCCTGCACTTCGCCTGCTTGATGGGCCGCCTCAATGAGCAGCGCCTCTTCCAGCCAGACCTGTGCGATGTGGACCTAGTGCTGGTGCCTCAGCATAGCGTGTTCCCCGCACACAAGGGTGTGCTGGCCGCCTACAGCCAGTTCTTCCACTCGCTCTTCACACAGAACAAGCAGCTGCAGCGGGTCGAGCTATCTCTGGAGGCACTCGCGCCCAGCGGCCTGCAGCAGATCCTCAACTTCATCTACACGTCCAAGCTGCTCGTGAACGCGGCCAACGTGCACGAGGTGCTCAGCGCGGCCTCGCTGCTGCAGATGGCTGACATCGCGGCCTCCTGCCAGGAGCTGCTGGACGCTCGATCCTTGGCGCCCTCGGGCCCTGTGGCCCTGGCACAGCCTGCCACCAGCTGTGCTCCGGTGCCTCCACCACCCTACTACTGTGACATCAAGCAGGAGGCAGATGCCCCAGGCCTCCCAAAGATCTATGCCCGGGAGGGCCCCGATCCCTACTCTGTGCGTGTGGAGGATGGAGCAGGGGCTGCTGGGGATGTAGGCTCTGCCACTGCTGGGCCAGCACAGACACTCTTCAAGGAGGAGAAGGAAGGGGCCCCTGAAGAGGCAGAGGCCCCAGGTAGCCTGTGCAAACTGGAAAGTGGAGAGGGGCTGGAGCCAGAACTGGATGCCTCGGGCACCTATGGGCACCAGGAGCAGTCACAAATCATTGTTGAGGTGAACCTTAACAACCAAACACTGCATGTGTCCACCGGACCCGAGGGCAAGCCAGGCTCTGGTGCCAATCCAGCCACTGTGGTGCTCGGCCAGGAGGATGGCATGCAGGGACACTCGGAAGAAGAGGAGGAGGAAGGAGGAGGGAGTGGAGGGGGAGAGGAAGAGGAGGAAGAGGAAGAAGAAGAGGAAGGCAGCCAGGGAGAGGAGGAGGAGGAAGAGGAGGAAGGGCCCAGCGATCATCGAGAGGATGAGGATGAAGAAGATGGGCCCAGTGAGCAGGATGCAGAGAGTTCTGAGGAGGAGAGGGAGGCTGAGGGCAGGCAGGACCCCGCAGGTCCCGCTGGGTGTCAGGGCAGCCAGGTGGACCCTCCACCACATAGCCGAATGTCCACACGGTCCCGGGGACAGAACACCCGGCGCCGGGCCACCCCTGAGCCAGAGGAGGCTGGACGTAGAGGTGGGAAGAGGCCCAAGGCCTCTGGAGCTGTTCCGGCATCCCAGGCAGCTGACGGGCTGGGGGCCAAGGTGAAGCTGGAGGAAAAACAGCAGCATCCGTGCCAGAAGTGCCCTCGGGTCTTCAACAACCGCTGGTACCTAGAAAAGCATATGAACGTGACCCACAGCCGGATGCAGATCTGTGGCCAGTGTGGGAAGCGCTTCCTGCTGGAGAGTGAGCTGCAGCTGCACAGACAGACGGACTGTGAGCGCAACATCCAG
Seq A exon
GTGAGACATGCTGCCCAGACAGCCCCCAGGAGGAGACAGGTGGAGCTGGGCTCTGGCCCACAGAGTTGTGAGCAGAGGATTGTGGCAGCACCTTTCCCAGAAGAGCAAGAGCAACAGGGATGTGGGGGAGAGCGGAGTTATCTGAAGCCCGGGGCAGTAGGAACTGCCGAGGGATGTGTCTTTTAACAAATCTAGGCCGGCAGAGAAATGAAGGGGCTTATCTGGAGAGGGCATCACCCTTTGCCCACCCCAGAGCCACCGTGCAGAGCAATAGATAGCCAATCAAGAGGGATCTTGGGTTCAACTCTGGCATGCCAGCTACTCTGAATCTGGAGGAAAAAGGCTAGATGAGGAATTTGGAAAGAAATGGGAGTGGGGGAAGGCTGGAGTGGCTGCCAGGTCTTGGGCCAGTCTGCACTGTCTGAGCACACTCCAGCATGTGCAGTGTGTGCACACACCCACACACCAGCATTCATAATCACCAGCACGTGTGTACACACCAGTATGTGTGCACACACACCAGCATACATGCACACACACCAACATGCATGTACATATACATACACATCAGCATTCGTGCACACACACCAGCATGCGTATAGACACACATATACATCAGCATTTGTGCACATACACACCAACATGCATGTACACATACCACACGCACACACCAACATGCATGTACACATACATACACATCAGCATTCATACACACACACACCAGCATGCCTTTCACCTTTTCTGACCCAAGAAGAAAAAAAGAAAACCTCAGGCCACGGGTAGGCGGGTGCTAATTGCCTGCACTAATTGCTAATTGGATGCCAGTGGGGAAGGTGTGCCTGGTGTCCTGCCCATCACCCACTCTGTGCACCTGTTTCCTGACCCTGGGCTGGCTGTCAGCTATTCCTGTACCTTAAGCCACCCCGAGTGTGCAAAACCTTTACTCCTTCCTGCCCAGACCCCAGCCTCTAGCCTCTGGAGCCCATGCTGGGATGTGCAGGGCAGGAGTCCAGGAGAGCAGCTTTCGGTCCAACTACCCTCCACTGCCTGAAGGACCTAAAGCCTCACAGCCTGTAGAACCTGCAGAACTGAAAGTTCCTACCTACCAGGCACAGCTGCCTTAACTAACTTGACCTACAGCCTCCTGCTGAGAGAAGCAGACAAAGGGGCGGTGCTTAGAAGAGGGATCCTGGAAGAGGTACCCCAACAGCCATGTGGGCAGGTGTGGAAGGAGTCAACCTAGTCTGGGAATGATCCAGCCTTCTTACCAGCACTCTTCAAGTGGAGGAACAGGCCTGCCCCAGAGAGAGGCCAAGGGTAACTCTGGGTTGCAGCCAAAGCGCCCTTCCTTTTCCCCGTAG
Seq C2 exon
TGCATGACATGTGGCAAAGCCTTCAAGAAACTGTGGTCTCTTCATGAGCACAACAAGATAGTGCACGGCTACGCGGAGAAGAAGTTCTCCTGTGAGATCTGCGAGAAGAAGTTTCACACCATGGCGCACGTGCGCAAGCACATGGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013419:ENSMUST00000093772:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.542 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0065126=BTB=WD(100=22.0),PF0334410=Daxx=WD(100=44.9),PF138941=zf-C2H2_4=WD(100=4.8)
A:
NA
C2:
PF134651=zf-H2C2_2=PU(26.9=14.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGTAGAGGTGGGAAGAGG
R:
CGTAGCCGTGCACTATCTTGT
Band lengths:
343-1704
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types