GgaINT0093590 @ galGal4
Intron Retention
Gene
ENSGALG00000005287 | ZBTB47
Description
zinc finger and BTB domain containing 47 [Source:HGNC Symbol;Acc:HGNC:26955]
Coordinates
chr2:1986550-1991354:+
Coord C1 exon
chr2:1986550-1987920
Coord A exon
chr2:1987921-1991206
Coord C2 exon
chr2:1991207-1991354
Length
3286 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CAGCCCCTCTCTCATTGCAGTGT
3' ss Score
8.62
Exon sequences
Seq C1 exon
CTGATAGTCGAAAAGACAACTGACTACCCTTCAGCCGAGTACTCCCTGGTGGAGGATGTAGCCCTCCACTTCACGTGTTTGATGGACAGACTGAACGAGCAGCGCCTCTTTCAGCCGGACCTGTGCGACGTGGACATCGTGCTGGTGCAGCACAAGAGCATCTTCCCGGCGCACAAGGGGGTCCTGGCAGCCTACAGCCAGTTCTTCCACTCCCTCTTCACCCAAAACAAGCAGCTGCAACGCGTGGAGCTCTCCCTGGAGGCCCTCACCTCGCAGGGCCTCCAGCAGATCCTCAACTTCATCTACACCTCCAAGCTCCTCGTCAACTCCTGCAATGTGCAGGACGTGCTGAACGCGGCCGCCGTGCTGCAGATGAACAACATTGCATCCTCCTGCCAGGACCTGCTGGACACGCGCTCGCTCAGCCTGGCTGCTGACATGGCCCTGCCCGCCGAGGGCTGTGCTGGCCCTCCGCCATATTACTGTGAGATCAAGCAGGAGGTGGATACCCCTCACCCCAAGATCTACGCCCGAGAGGGCACTGACCCCTACTCGGTGCGGGTGGAGGATGGGGCGGGTGGTGGGCCGCTGCCGCCAGGGCAGGCCAAGCAGTACTACAAGGAGGAGAAGGACGGCGGCCCGGGTGCTGTCTGCAAGATGGAGGGTGAGGAATCCGAGGAGGACCTGGACAGCCAGGGCTCCTACAACCGGGAACAGATCATCGTGGAGGTGAACCTCAACAACCAGACTCTCAATGTCTCCAAGGGCATGGAGGGGAAAGCGGCCGCCGGCGAGGCGGCTGTGATGGGGCGGCCTGATGGAGATGGACGTGACACAGAGGAGGATGGGGAGGAGGAGAACGAGGAAGGGGAGGAGGAGGAGGAAGAAGAGGAGGATGCGGAGGTGGGTGAGGAGGAAGAGGAGGAGCACAGTGAGGAGGAAGACCTGGAGGAGACAACAGAAGAAGAGGAGGAGGAGGATGATGATGAAGACACATCAGAGATGAAAAGGGAAAAGAGTGGGCAGACCCGCAGAGGAAGCCGAGCATCCAAAGCCACCAAATCTGCCATGGCCACCCGGTCCCAGGAGATGGCCAAGACAGAAGAGGAGGAAGAGGAAGAAGAGGAAGGGCAACGAGGGAGGAAGAGGAAAAAAGAGCAAGACGGGCTGGGCCAGAAGGTGAAACTGGAAGAGAAGCAGCACTACCCATGCAAGAAGTGTCCCCGGGTCTTCAACAACCGCTGGTACCTGGAGAAGCACATGAACGTCACGCACAGCCGCATGCAGATCTGTGACAAGTGTGGCAAACGCTTCCTGCTTGAGAGTGAGCTGCTGCTGCACCATCAGACTGACTGCGAGAAGAACATCCAG
Seq A exon
GTGAGCCTGCCAGCCCAGCAACATCCCCCCAGGGGAAGGGACATCCCATCGTGATGGGGATCCCATCGAGGGGAGGGACATCTCACTGTGAGTGGACAGCCTGCTGGGGAGGGAGATGATGGGACATCCTACTGAGGTGGTTCATCCCACCAAAGAGAAGGATGTCCCACCATGACAAGACATCCCAGTGGGGAGAACATCCCACCCACTTACACCCTAGCATGATCGTATGTGCAAATAATACTTCTGATGTTGTGGATGGACGTGGTGGACTGGAGGGAACCTTGCTTCTCCTGTGACTTGTCTTTGAGCTTGGCGGGTTCCCACGGTGGCACAGGACCAGAGAATTAGTTCTGACAGTGTCTTCCCCTTGGCCAGCCAGGTAGTAATGCAGAGTAGTTTGGGGGGAGTAGTTTTACTTTGAGTTTATTCAGTTAATCTGGATAAAACACTGCAAGGCTCTAATAGAGACGCACTCCAGCCGGTTCCACCCAGGCTTAAACCAATTTAGCTTGATTTGAAGAGTTGCTGACATAAGTAAGTGGCTCTAATCTGCCTTTTGTGCTCTTTAGCTCACGTATTTAGCAAATTTCCAAACTCACTTGACATCAGTGCATGGCTCAGGGACTGTATGCCCTTTGCCTAGCATTAATGGGACTCATCTGCATGTGCAAATCACCCCCATCAGATCAGTGCAATTTTGGGGTGATAGACAGGCATCCCTGCCAAGCAGCAAAACTGCACATTCCTGCAGACTTCTAATCTCTACTGAACAGTTCTGCACAGGGCTGCTGCTGTTAATAAAAGAACAAAATCTTCTAGGGAGCTTCACACCGAATGCACCTTCCACCAAACAGTGGGATTGTAAGGACTTTTGCACCCCTCTTGGTGAAGGGAACACAACCGGGGTGCCACCACAGCCCTACAGTGCGTGCATCTCAAATAAAATAGGTGACGAAGCCCTTTGGAGTGTCCTTCTGAAAAACTCACGGTTCTGATGCCTGCTTTTTTGGGATGACTTTGCGTTCACTGAACCAGGACCGGTGAATGTATGCCTGACGCCTCTTGCACGCTGGTGGCTGGTTCAGAGCCCATCGTAGAGCAATTGAAAGGAGATTTTCCCTGAGCGTTTCTTCACGCCTTTCTGCTGCTTTCCTGGTGGATGACTTGGGGCTATCAGCGAGCGCTGTCACCTCTTTGCTTTTTTCCCTCCTCCCTTTTTAATCCCTTTTCTGGGTCGTTTTGGGATAGGGTGAGCCACAGCTGCCCCTGTGGTGACCTCCCTCCGCGGAAGGCTTGGCTCATTACCTCTCACTTACTCAGGCATTTTGCATTTTAGAAATAGCAGCCAAATTCACTCTATTTAGCCCGACAATATCGAATAACTTTATCAATATACCATGGAATTATGCCTGGTTGGAAAAGGGAATTTTTTTGTCTCTATGTGGACAATTTTTAACCACAGCCATGGAAGGACCATTCCTCTTACCCTATTTGTGTCGTCTTAAATCTGTTGCTGATGTGTCCCCAGATCTCACCCTGAGGACCCTCCATCCCTCACTGCAGCTTTGCTCCCTGTGAACGTTTCCCATTGACACCCATGACCCCATCGCAGCTTTCCTGCCCTGCTGCCTCAATAAGGATTCACCCTTTGCTTTATCACGTTGTTCTCAAAATCTCTCTTGACCTGCTCCAGTGTGATTTTGCTCTTCACTTGCCAGAATTTATTGTATGACTTGCCTTGTCCTTTGCCTGAGGGCACAGGGCTCTGCCCTCGGGGCTGCATGGTCCCAGATGAGGACTTTCCTACATCTCCTTTTCTCCGTCTTTAATTTTAATATTCCCCTGCAGTCTTTTTCATTTTAAGTGGAGAATGTGGAAGTTGGTCTCAAAACATCTCTTAAGGCAGAGATAAAACTGCTCTGATCTATAGAAATATTTACATAAAACCAGTAAAACTCAGAGGACTGCTCATGCTGAAATTCAAGCCTGCCAGGATGAAGAAATCGAGTGCTGGGAGTGCATCTGTGACCCTCATTTTGCCTCCCAGGCACCTAAATATAAAGATAGAGAGACACTATGACAACATGACGTAATAGTATATTTTCTGTGGTACTGCAGCCTCATTCAGTGCAAAATTTGGATGAAGCCCATCTATGAGCATCTCTTCCCCTGGATGGGTGGGGGAGGTTGAGGCCACGCTGTCTGCACCCCCTGTGAAATCCCCCATGGGCTTGCTGATGCTGCTTGGCTGTGCTGTTGCCAGATGCTTCCTAGGCATCAATTATTACTTGCAATGTACCTGCAAGGAGATGTTCTGAGCCCAGTTGGACAAGAGGAGTTGGACAAGAGTACACGGGGAGATGAAGGCTGCTCCAACAGAGCAAGAGCTGTGCAATGCTTTTGTTTCCCCAAGCTGATCTCGTGCACCACTGGTTGCGTTCACCCCCCTCTGTTTGGACTCAGAAAGGGTTTTGAGCCTATGCAGAAGCTGTGGGCACATGGTAAAAAGCCAACCACAGCCCATGCCAGAGGTGAAAAGCCGTTCATGGAGGCACAGGTTGCAGCTTACCCTGGCAGCTTTCTGACAAGCATTGAGCTTGGTGGAGCAGGAGCAAACCCTTACTGTGATTCCTAGGAGGAGACTTTGCTAGTGATTAACATTGTCACATCCTGTCATTCTGTTGTGCAAATGAGCCAGTTTGGGGTCTGTTTTGTTCCATTAATGGCTGTTTTCTGAATAAATGGATATTAATAGATTTTTGGAGATTCATGGGCATTTTCAAAATCCATGGATACTAGTAGAATTTTGGGGATGAATGCCTATTTTCAGGGAACTCATTTAATGCTAGAATACCTGCTGAGGACTGAAGTCATGAAGGCTTCCCTAGCCTGGGCCTCCCCTTTTCCCTGTATCCCTTGCAGCCTTCTAATGCTAATACAGTGGGGTTGGGTTTTTTTGAATATAATGTCTTTATTGTGTGCAAGCATGAAATCCCCAGCTGGGAATAAGACCCTGGTGCATGAGCCATAGGTTTTGCAAGTCTCATACATCCATTGCTGGAGGGATGTGTCCTTCCTTGGGAAGGCATCAGCCCAGCCAGTGGATTGAAAATTGAGTTTTGGAGCTTTTGAAGCCGCAAGGTCTGTAGCAACCTTGCTTGTCATTGTGTTAGCTTCAGGTTTTGTGATGATGTTGTCTTTCAACAGCCAAAGCAAAACCCAAATACCGGCAATGCCTCGGTACGTTCCCCTGCCTCCCTGCCCAGCCCCTCTCTCATTGCAG
Seq C2 exon
TGTGTGACGTGTGGGAAGGGCTTCAAGAAGCTCTGGTCGCTCCATGAGCACAACAAGATTGTCCATGGCTACGCTGAGAAGAAGTTCTCCTGCGAGATCTGCGAGAAGAAGTTCTACACCATGGCCCACGTGCGCAAACACATGGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005287:ENSGALT00000008478:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.523 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0065126=BTB=WD(100=25.6),PF0009621=zf-C2H2=WD(100=5.6)
A:
NA
C2:
PF134651=zf-H2C2_2=PU(26.9=14.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]