DreEX0000362 @ danRer10
Exon Skipping
Gene
ENSDARG00000059093 | ANK1 (1 of 2)
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:HGNC:492]
Coordinates
chr5:68248261-68270435:-
Coord C1 exon
chr5:68270340-68270435
Coord A exon
chr5:68254682-68254783
Coord C2 exon
chr5:68248261-68248359
Length
102 bp
Sequences
Splice sites
3' ss Seq
CTCCTGCATGTGTTTCTCAGGCT
3' ss Score
7.55
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
AGATAGAGTAACACTGGAAAACACTGAGGTAGAAATAGAGAGAAAGAAAGAGAGAGAGGCTGAGCCGGGATGCCAACCAACACCATCCTTTTTGGA
Seq A exon
GCTGACGCTGCCACCAGTTTCCTCCGCGCAGCTCGCTCAGGTAATCTGGAAAAGGCTCTAGACCACATCAAGAACGGCATCGACATCAACACAGCCAATCAG
Seq C2 exon
AATGGACTCAACGGGCTGCATTTGGCCTCCAAGGAAGGCCATGTTAAAATGGTGCTGGAGCTGCTTCACCATGGTATTGTACTTGAGACGACAACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059093_MULTIEX2-1/28=C1-2
Average complexity
S
Mappability confidence:
97%=100=97%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.061
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(5.6=44.4)
A:
PF127962=Ank_2=PU(29.0=79.4),PF134141=TPR_11=PU(49.1=76.5)
C2:
PF127962=Ank_2=FE(34.4=100),PF134141=TPR_11=PD(47.2=75.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GATAGAGTAACACTGGAAAACACTGA
R:
CTTCGTTGTCGTCTCAAGTACA
Band lengths:
194-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]