GgaEX6039839 @ galGal3
Exon Skipping
Gene
ENSGALG00000003135 | Q90717_CHICK
Description
NA
Coordinates
chr6:9980221-10035785:+
Coord C1 exon
chr6:9980221-9980334
Coord A exon
chr6:10035099-10035200
Coord C2 exon
chr6:10035687-10035785
Length
102 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCTTCTTTCTTCTAGTCG
3' ss Score
10.14
5' ss Seq
CAGGTTGAA
5' ss Score
1.26
Exon sequences
Seq C1 exon
ATGGCTCACGCGGCATCACAGTTAAAGAAAAACAGGGATTTAGAAATTAATGCTGAAGAAGAAACTGAGAAAAAAAGGAAACACAGGAAAAGATCCCGGGATCGGAAGAAAAAG
Seq A exon
TCGGACACAAATGCAAGTTACTTGAGAGCTGCTCGAGCTGGCAACTTGGAAAAGGCTCTTGACTACTTAAAAAGTGGAGTGGACATCAACATTTCTAATCAG
Seq C2 exon
AATGGGTTGAATGCACTCCATCTCGCTTCCAAAGAAGGGCACGTAGAAGTTGTCTCTGAACTGATACAGCGAGGTGCCAGTGTGGACGCAGCGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135-'0-2,'0-0,2-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.058 C2=0.005
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(28.3=76.5)
C2:
PF127962=Ank_2=FE(34.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCACGCGGCATCACAG
R:
CTTTGTCGCTGCGTCCACA
Band lengths:
210-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]