DreEX6067851 @ danRer10
Exon Skipping
Gene
ENSDARG00000077582 | ank3b
Description
ankyrin 3b [Source:ZFIN;Acc:ZDB-GENE-060621-2]
Coordinates
chr12:7771008-7790447:-
Coord C1 exon
chr12:7790407-7790447
Coord A exon
chr12:7771756-7771857
Coord C2 exon
chr12:7771008-7771106
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTCTGTCTGTTTCAGACT
3' ss Score
12.42
5' ss Seq
CAGGTCATT
5' ss Score
4.45
Exon sequences
Seq C1 exon
ACACTCAGCCAGGAGAGAGACCACTAGTGCCTACAAATATG
Seq A exon
ACTGACAGTAATGCCAGTTACCTCAGAGCGGCCCGGGCTGGAAACATTGAGAAAGCCCTCGATTATATAAAGACTGGTGTGGACATCAACATCTGCAATCAG
Seq C2 exon
AATGGGTTGAACGCTCTTCATCTGGCTTCCAAAGAAGGCCACGTGGAGGTTGTGACGGAGCTTATTAAACTTGGTGCCACGGTGGACGCCGCAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077582-'2-4,'2-3,7-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.106 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF138571=Ank_5=PU(72.2=76.5)
C2:
PF138571=Ank_5=PD(22.2=24.2),PF127962=Ank_2=PU(18.5=45.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTCAGCCAGGAGAGAGAC
R:
CTTTGTTGCGGCGTCCACC
Band lengths:
140-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]