MmuEX6048930 @ mm10
Exon Skipping
Gene
ENSMUSG00000069601 | Ank3
Description
ankyrin 3, epithelial [Source:MGI Symbol;Acc:MGI:88026]
Coordinates
chr10:69533772-69808971:+
Coord C1 exon
chr10:69533772-69534284
Coord A exon
chr10:69808416-69808517
Coord C2 exon
chr10:69808873-69808971
Length
102 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCTTTCTTCTTATAGTCT
3' ss Score
10.19
5' ss Seq
CAGGTCCGT
5' ss Score
6.47
Exon sequences
Seq C1 exon
CAGCGCACATGCACGTATGCCTCCCCCTTTCTCTCTCTCACCATTTCCAAGCTAGAATCACCGTGGAGAAGCAAGCCCTGAAATGTTGTCAAGATCTTTTCTCGGGGTAACGACTGGCTAAAAAAACAAATAAAAAGAGAGAGAAAGGAAGAAAAAGAAAGAAGGAAGAAAGGAAGGAAGAAAACAAAGGGTTGGAATATTGATTTTTCTTTGGAGGAATAACCAGGGCTTTGCTGGAGAGAACACCCAGTTCCTCCCTGAGGCGAGCTGAGTTGCCCGTGACAGCAGCCAGGGCTGGCTTGAAGCAGCCGCTCTGCCTGGGGAGTTCCCTAAATGGACTTTGGTCTCAATGCTGTGACTCTTTGCCGTGGGTTTGGATGTGGGAACACGGAAGGTGATCTCCTGCCTCGTCTCAACTCCCCTGATCTCAAGGAAAGATGAGTGAAGAGCCAAAGGAGAAGCCCGCCAAGCCTGCTCATAGGAAGAGGAAAGGAAAAAAG
Seq A exon
TCTGATGCCAACGCAAGTTACTTAAGAGCAGCTCGGGCAGGGCACCTGGAAAAGGCCCTTGACTACATCAAAAATGGAGTGGACGTCAACATCTGTAACCAG
Seq C2 exon
AATGGATTGAATGCACTCCATCTTGCTTCCAAAGAAGGCCATGTGGAAGTGGTCTCTGAGCTGCTGCAGAGGGAAGCCAATGTTGATGCCGCCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069601-'14-33,'14-31,24-33=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.228 C2=0.095
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(28.3=76.5)
C2:
PF138571=Ank_5=PD(22.2=24.2),PF127962=Ank_2=PU(16.5=39.4)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCTGTGACTCTTTGCCGT
R:
GGCATCAACATTGGCTTCCCT
Band lengths:
242-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types