HsaEX6088508 @ hg38
Exon Skipping
Gene
ENSG00000151150 | ANK3
Description
ankyrin 3 [Source:HGNC Symbol;Acc:HGNC:494]
Coordinates
chr10:60279050-60389730:-
Coord C1 exon
chr10:60389425-60389730
Coord A exon
chr10:60279538-60279639
Coord C2 exon
chr10:60279050-60279148
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTGTTTCTTTTTTATTTTAGTCT
3' ss Score
9.46
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
Exon sequences
Seq C1 exon
GGACACCATCATTTGGGTTTTTAAAAGCTTCAGCTTCTCCAGCATCTTTGCATTGTGAATATCTTCCTGCTTCTAGTCAAAGCTTTCTCTCTAGTGATTGGAATGCTGCTGTAAGCCTGATTAGAGGTGCCTGAGGATATCACCTTTTACAAGGAAGCCGTGTGTGCTTGAGAGGATCTTTTTAAATGCATTATGGCTCATGCAGCCTCACAATTAAAGAAAAACAGGGATTTAGAAATCAATGCTGAAGAAGAGCCTGAGAAAAAAAGGAAACACCGCAAACGGTCCCGGGATCGGAAGAAAAAG
Seq A exon
TCTGATGCCAATGCAAGTTACTTAAGAGCAGCTCGAGCTGGACACCTTGAAAAGGCCCTCGACTACATAAAAAATGGAGTTGACATCAACATTTGCAATCAG
Seq C2 exon
AATGGGTTGAACGCTCTCCACCTTGCTTCCAAAGAAGGCCATGTAGAGGTTGTTTCTGAGCTGCTGCAGAGAGAAGCCAATGTGGATGCAGCTACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151150-'23-26,'23-24,32-26
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.235 C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(28.3=76.5)
C2:
PF127962=Ank_2=FE(34.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGTGTGCTTGAGAGGATC
R:
GTAGCTGCATCCACATTGGCT
Band lengths:
244-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains