GgaEX6039839 @ galGal4
Exon Skipping
Gene
ENSGALG00000003135 | chAnk3
Description
ankyrin 3, node of Ranvier (ankyrin G) [Source:RefSeq peptide;Acc:NP_001264026]
Coordinates
chr6:8211641-8374875:+
Coord C1 exon
chr6:8211641-8211679
Coord A exon
chr6:8374189-8374290
Coord C2 exon
chr6:8374777-8374875
Length
102 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCTTCTTTCTTCTAGTCG
3' ss Score
10.14
5' ss Seq
CAGGTTGAA
5' ss Score
1.26
Exon sequences
Seq C1 exon
GTGTGCCCTAGATTCTACCCTCCAGGAAGCCCCAGAAAG
Seq A exon
TCGGACACAAATGCAAGTTACTTGAGAGCTGCTCGAGCTGGCAACTTGGAAAAGGCTCTTGACTACTTAAAAAGTGGAGTGGACATCAACATTTCTAATCAG
Seq C2 exon
AATGGGTTGAATGCACTCCATCTCGCTTCCAAAGAAGGGCACGTAGAAGTTGTCTCTGAACTGATACAGCGAGGTGCCAGTGTGGACGCAGCGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135-'6-5,'6-4,19-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.923 A=0.265 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(28.3=76.5)
C2:
PF127962=Ank_2=FE(34.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGCCCTAGATTCTACCCTC
R:
CTTTGTCGCTGCGTCCACA
Band lengths:
138-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]