HsaEX6088508 @ hg19
Exon Skipping
Gene
ENSG00000151150 | ANK3
Description
ankyrin 3, node of Ranvier (ankyrin G) [Source:HGNC Symbol;Acc:494]
Coordinates
chr10:62038808-62374982:-
Coord C1 exon
chr10:62374944-62374982
Coord A exon
chr10:62039296-62039397
Coord C2 exon
chr10:62038808-62038906
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTGTTTCTTTTTTATTTTAGTCT
3' ss Score
9.46
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
Exon sequences
Seq C1 exon
GGTGGCTTTGGATCAGATTATTCACGAAGCTCTAGAAAG
Seq A exon
TCTGATGCCAATGCAAGTTACTTAAGAGCAGCTCGAGCTGGACACCTTGAAAAGGCCCTCGACTACATAAAAAATGGAGTTGACATCAACATTTGCAATCAG
Seq C2 exon
AATGGGTTGAACGCTCTCCACCTTGCTTCCAAAGAAGGCCATGTAGAGGTTGTTTCTGAGCTGCTGCAGAGAGAAGCCAATGTGGATGCAGCTACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151150-'1-9,'1-8,7-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.769 A=0.210 C2=0.061
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(28.3=76.5)
C2:
PF127962=Ank_2=FE(34.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGCTTTGGATCAGATTATTCAC
R:
CTTTGTAGCTGCATCCACATTGG
Band lengths:
138-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)